Prognostic value of miR-190a-5p in renal cell cancer and its regulatory effect on tumor progression

Abstract

Purpose

As a usual malignant tumor in urinary system, renal cell cancer is regulated by microRNAs (miRNAs). This study revealed the prognostic value and regulatory effect of miR-190a-5p in renal cell cancer patients.

Methods

A total of 253 renal cell cancer patients were included for prognostic value analysis. The target gene of miR-190a-5p was detected by luciferase reporter assay. Cell Counting Kit-8 analysis and Transwell analysis were performed to explore the proliferation, removal capability, and invasiveness of 786–0 and A498 cells. Prognostic value was calculated by Kaplan–Meier curve and Cox regression analysis.

Results

miR-190a-5p was more down-regulated in tumor tissues than in adjacent tissues. Renal cell cancer cases were differed as low and high groups ground on mean miR-190a-5p expression in tumor tissues. Overall survival probability was obviously high in patients with high miR-190a-5p level (log-rank test P = 0.011). Cox regression analysis revealed that miR-190a-5p expression (relative risk (RR) = 1.751, 95% confidence interval (CI) = 1.057–2.900, P = 0.030) and tumor node metastasis stage (RR = 1.719, 95% CI = 1.059–2.792, P = 0.028) were specialty indicators for poor renal cell cancer prognosis. GDF11 was directly targeting miR-190a-5p. Overexpressed miR-190a-5p could reduce the GDF11 expression, proliferation, removal capability, and invasiveness of renal cell cancer 786–0 and A498 cells. Elevated GDF11 could lead to a changeover of proliferation, removal capability, and invasiveness inhibition, which is induced by miR-190a-5p.

Conclusion

miR-190a-5p was reduced in renal cell cancer tissues, and predicted worse outcomes of renal cell cancer cases. Overexpressed miR-190a-5p could restrain the proliferation, removal capability, and invasiveness of renal cell cancer cells via suppressing GDF11.

Keywords

Renal cell cancer miR-190a-5p GDF11 prognosis proliferation

Introduction

Renal cell cancer (RCC) is a common malignancy in urinary system, originating from the urinary tubular epithelia of the renal parenchyma.¹ Onset and death rates of RCC have been overstated in recent years, and the burden of RCC has continued to grow.^2,3 Due to insensitivity to radiotherapy and chemotherapy, RCC is mainly treated by surgery, and the outcomes is poor.^4,5 The prognostic factors of RCC patients include age, pathological characteristics of the tumor, growth rate, treatment method, surgical margin, etc.^6,7 MicroRNAs (miRNAs), as a class of non-coding small RNA, regulate gene expression.^8,9 MiRNA levels control the proliferation, differentiation, and apoptosis of cancer cells.^10,11

miR-190a-5p is obtained from intron of the talin 2 gene.¹² Han et al.¹³ suggested that miR-190a-5p was reduced in cervical cancers. Liang et al.¹⁴ suggested that resveratrol could suppress the apoptosis of hepatocytes via reducing miR-190a-5p level. A negative relationship was discovered between ferroptosis and miR-190a-5p in rat cardiomyocytes; over-expressed miR-190a-5p could suppress reactive oxygen species (ROS).¹⁵ Ferroptosis could induce the programmed cell death of renal parenchymal cells.¹⁶ Sodium selenite could restrain the proliferation and migration, and promote apoptosis and ROS formation of 786-O cells.¹⁷ Overexpressed miR-190 could restrain the proliferation, removal capability, and epithelial-mesenchymal transition (EMT) in breast cancer (BC).¹⁸ Molecular data from The Cancer Genome Atlas indicated that miR-190 expression was correlated with the outcomes of kidney cancer.¹⁹ Therefore, miR-190a-5p might participate in RCC development. However, there were no previous studies focused on the prognostic value and function role of miR-190a-5p in RCC patients.

Current research analyzed the prognostic value of miR-190a-5p in RCC patients. The regulatory role of miR-190a-5p on tumor progression also has been explored.

Methods

Participants

The sample size was calculated by GPower3.1 (http://www.gpower.hhu.de/), when the effect size = 0.3, α = 0.05, statistic power = 0.95, and the sample size was 253. Then 253 RCC patients were randomly selected from Tianjin Medical University General Hospital from June 2016 to May 2018. RCC patients were diagnosed by two pathologists according to the American Joint Committee on Cancer Staging.²⁰ Tumor tissues and adjacent tissues were obtained during the operations. Ratification was offered by the Institutional Review Board of the Tianjin Medical University General Hospital. Signed informed consent was provided by all patients before enrolling in this research. The follow-up time was 5 years.

Extraction of miRNA and quantitative real-time reverse-transcription polymerase chain reaction (qrt-PCR)

Total mRNA was separated by MagMAX™ mirVana™ total RNA extraction kit (Applied Biosystems, Thermo Fisher Scientific, Carlsbad, CA, USA) conforming with the direction. MiR-190a-5p and GDF11 were synthesized by SuperScript IV UniPrime One-Step RT-PCR System (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s instruction. Relative expression of miR-190a-5p and GDF11 were calculated by 2^-ΔΔCt method. The reference genes were U6 and β-actin. The sequences are listed in Supplementary Table 1.

Cell culture

Human kidney epithelial cells (HKb-20, BNCC368130), RCC 786–0 (BNCC338472), and A498 (BNCC100609) cells were purchased from BeNa culture collection biotechnology Co., Ltd. HKb-20 and 786–0 cell lines were cultured in 90% DMEM-H medium with 10% fetal bovine serum (FBS), A498 was cultured in 90% EMEM medium with 10% FBS at 37 °C with 5% CO₂.

Luciferase reporter assay

Target gene of miR-190a-5p was predicted by TargetScanHuman, StarBase, and miRDB databases. Venn diagram (http://www.bioinformatics.com.cn) obtained the candidate genes, then we selected GDF11 as the target gene.

Wild type (wt) or mutate type (mt) of GDF11 were transfected into miR-190a-5p mimic or miR-190a-5p mimic negative control (NC) cells by Lipofectamine 3000 (Invitrogen). Luciferase activity was tested by luciferase Reporter Assay System (Promega, Madison, WI, USA).

Cell transfection

miR-190a-5p mimic, miR-190a-5p mimic NC (negative control), GDF11 overexpression RNA (oeGDF11) and oe-NC sequences were conducted by Sangon Biotech (Shanghai) Co., Ltd (Shanghai, China). miR-190a-5p mimic and mimic NC were respectively mixed with Lipofectamine 3000 and transfected into 786–0 and A498 cell lines and incubated in serum-free DMEM-H medium at 37°C.

Cell counting kit (CCK)-8 analysis for proliferation

DMEM-H medium (100 μL) with 10% FBS (containing 10⁶ cells) was cultured in 96-well plates. Cell proliferation of 786–0 and A498 cells in different transfected groups was detected by the CCK-8 kit (Shanghai Enzyme-linked Biotechnology Co., Ltd, Shanghai, China) following the directions. The OD values were detected at 450 nm after respectively cultured for 0, 12, 24, 48, and 72 h.

Migration and invasion analysis

Transfected cells (200 μL containing 2 × 10⁴ cells) with serum-free DMEM-H medium were incubated in upper chamber of Transwell. Another 800 μL DMEM-H medium with 10% FBS was put into the lower chamber. After incubating at 37°C for 24 h, cells on the lower surface were fixed by paraformaldehyde and stained by 0.1% crystal violet. Migration cells were scanned and calculated under an inverted microscope in five randomly selected visual fields. The Matrigel matrix was precoated in the upper chamber, to perform the invasion assay.

Data analysis

GraphPad Prism 9.0 was used to plot the figures. All data were evaluated by SPSS 22.0. The differences between groups were calculated by χ² test or independent sample t-test. The prognostic value of miR-190a-5p was appraised by the Kaplan–Meier (KM) curve. The Cox regression analysis was used to analyze the effects of features on RCC prognosis. Two-tailed P-values < 0.05 were considered a significant difference.

Results

miR-190a-5p was decreased in RCC tissues

Reduced miR-190a-5p level was discovered in the tumor tissues (0.593 ± 0.175) than in adjacent tissues (1.000 ± 0.144) (Figure 1(A), P < 0.001). RCC cases were differed into low and high groups according to mean miR-190a-5p expression in tumor tissues. Then we compared the differences in characteristics between the two groups (Table 1). Lymph nodes metastasis (P = 0.022), high tumor node metastasis (TNM) stage (P = 0.017), and large tumor size (P = 0.042) were more frequently discovered in the low miR-190a-5p group. Other characteristics, including age, gender, metastasis, recurrence, therapy methods, side, and histotypes had no significant difference between the high and low groups. Also, relative miR-190a-5p expression had no significant difference between clear cell, papillary, and other RCC histotypes (Supplementary Figure 1).

Figure 1.

Influences of miR-190a-5p for RCC development. (A) miR-190a-5p levels in RCC tissues and adjacent tissues. *** P < 0.001. (B) Kaplan–Meier (KM) Curve. RCC cases with high miR-190a-5p levels had a high overall survival probability. (C) Relative miR-190a-5p level in HKb-20, 786–0, and A498 cell lines. (D) Relative expression of miR-190a-5p in transfected 786–0, and A498 cells. (E1) Influences of miR-190a-5p for cell proliferation in 786–0 cells. (E2) Influences of miR-190a-5p for cell proliferation in A498 cells. (F) Influences of miR-190a-5p for migration of 786–0 and A498 cell lines. (G) Effects of miR-190a-5p for invasion of 786–0 and A498 cell lines. *** P < 0.001.

Table 1.

Baseline and clinical characteristics of RCC.

Characteristics	Total (n = 253)	miR-190a-5p expression		P-value
Characteristics	Total (n = 253)	High (n = 112)	Low (n = 141)	P-value
Age
mean	62.31 ± 6.50			0.925
<60	107(42.29)	47(41.96)	60(42.55)
≥60	146(57.71)	65(58.03)	81(57.45)
Gender				0.847
Male	135(53.36)	59(52.68)	76(53.90)
Female	118(46.64)	53(47.32)	65(46.10)
Lymph nodes metastasis				0.022
No	227(89.72)	106(94.64)	121(85.82)
Yes	26(10.28)	6(5.36)	20(14.18)
Recurrence				0.067
No	177(69.96)	85(75.89)	92(65.25)
Yes	76(30.04)	27(24.11)	49(34.75)
TNM stage				0.017
I+II	202(79.84)	97(86.61)	105(74.47)
III +IV	51(20.16)	15(13.39)	36(25.53)
Tumor size (cm)				0.042
≤4	91(35.97)	48(42.86)	43(30.50)
>4	162(64.03)	64(57.14)	98(69.50)
Side				0.361
Right	157(62.06)	66(58.93)	91(64.54)
Left	96(37.94)	46(41.07)	50(35.46)
Histotypes				0.736
Clear cell	229(90.51)	102(91.07)	127(90.07)
Papillary	20(7.91)	9(8.04)	11(7.80)
Others	4(1.58)	1(0.89)	3(2.13)
Status (die)	79(31.23)	21(18.75)	58(41.13)	<0.001

RCC: renal cell cancer; TNM: tumor node metastasis.

Prognostic value of miR-190a-5p for RCC

A total of 79 patients (31.23%) died during the 5-year follow-up (21 cases in the high group and 58 in the low group). The KM curve was performed to explore prognostic effects of miR-190a-5p for RCC and found that the overall survival probability was high in patients with a high miR-190a-5p level (Figure 1(B), log-rank test P = 0.011).

Survival analysis of characteristics, which were significantly different between the high and low groups, was performed by the Cox regression model. In univariate analysis, low miR-190a-5p expression (relative risk (RR) = 1.870, 95% confidence interval (CI) = 1.134–3.083, P = 0.014) and high TNM stage (RR = 1.865, 95% CI = 1.154–3.017, P = 0.011) were distinctly correlated with worse survival of RCC cases. Multivariate analysis revealed that miR-190a-5p expression (RR = 1.751, 95% CI = 1.057–2.900, P = 0.030) and TNM stage (RR = 1.719, 95% CI = 1.059–2.792, P = 0.028) were indicators for poor RCC prognosis (Table 2).

Table 2.

Univariate and multivariate survival analyses.

Characteristics	Univariate analysis		Multivariate analysis
Characteristics	P-value	RR (95% CI)	P-value	RR (95% CI)
Age	0.918	1.024 (0.651–1.611)
Gender	0.607	1.123 (0.722–1.745)
Lymph nodes metastasis	0.604	1.192 (0.614–2.314)
Recurrence	0.971	1.009 (0.633–1.607)
TNM stage	0.011	1.865 (1.154–3.017)	0.028	1.719 (1.059–2.792)
Tumor size (cm)	0.331	1.265 (0.787–2.034)
Side	0.334	0.794 (0.496–1.269)
Histotypes	0.191	0.511 (0.187–1.399)
Position	0.798	0.942 (0.594–1.493)
miR-190a-5p (low)	0.014	1.870 (1.134–3.083)	0.030	1.751 (1.057–2.900)

RR: relative risk; 95% CI: 95% confidence interval; TNM: tumor node metastasis.

Effects of miR-190a-5p for cell viability

Relative miR-190a-5p level was also reduced in 786–0 and A498 RCC cells when compared with HKb-20 (Figure 1(C), P < 0.001). miR-190a-5p was elevated (Figure 1(D), P < 0.001) in miR-190a-5p mimic cells than in miR-190a-5p mimic NC cells. Cell proliferation rate was reduced in miR-190a-5p mimic transfected 786–0 (Figure 1(E1), P < 0.001) and A498 (Figure 1(E2), P < 0.001) cells. Transwell analysis demonstrated that migration (Figure 1(F), P < 0.001) and invasiveness (Figure 1(G), P < 0.001) of miR-190a-5p mimic cells were distinctly reduced compared to those in mimic NC cells. These results demonstrated that overexpressed miR-190a-5p could suppress the GDF11 expression, proliferation, removal capability, and invasiveness of RCC cells.

GDF11 is a direct target gene of miR-190a-5p

Target gene of miR-190a-5p was selected from TargetScanHuman, StarBase, and miRDB databases. Common elements in three databases were gathered by the Venn diagram using bioinformatics (http://bioinformatics.com.cn). Five intersection genes have been found (Figure 2(A)), and GDF11 was selected for the following function analysis. miR-190a-5p directly combined with GDF11 mRNA at the position 2687–2694 of 3ʹUTR (Figure 2(B)). Relative GDF11 expression was significantly up-regulated in RCC cell lines than in HKb-20 cells (Figure 2(C), P < 0.001). Luciferase activity was obviously decreased in the miR-190a-5p mimic + GDF11 3′UTR wt transfected 786–0 (Figure 2(D1), P < 0.001) and A498 (Figure 2(D2), P < 0.001) cells than in miR-190a-5p mimic + GDF11 3′UTR mt cells. It revealed that GDF11 was directly targeting to miR-190a-5p. miR-190a-5p mimic was transfected into 786–0 and A498 cells, GDF11 was distinctly decreased (Figure 2(E), P < 0.001) in miR-190a-5p mimic cells than in miR-190a-5p mimic NC cells. Besides, expression of GDF11 was distinctly increased in miR-190a-5p mimic NC + oeGDF11 cells, and mimic + oeGDF11 cells (Figure 2(F), P < 0.001).

Figure 2.

GDF11 is a target gene of miR-190a-5p. (A) Venn diagram for the selection of miR-190a-5p target genes. (B) Combined position between miR-190a-5p and GDF11 3′UTR. (C) Relative expression of GDF11 in HKb-20, 786–0, and A498 cell lines. (D1) Luciferase reporter assay between miR-190a-5p and GDF11 in 786–0 cells. (D2) Luciferase reporter assay between miR-190a-5p and GDF11 in A498 cells. (E) GDF11 levels in miR-190a-5p mimic transfected 786–0, and A498 cells. (F) Relative expression of GDF11 in 786–0, and A498 cells with the combined transfection of miR-190a-5p mimic and oeGDF11.

GDF11 could reverse the influences of miR-190a-5p for RCC cells

Cell proliferation of 786–0 (Figure 3(A1), P < 0.001) and A498 (Figure 3(A2), P < 0.001) cells were facilitated by oeGDF11 both in the cells with or without miR-190a-5p overexpression. Besides, the overexpression of GDF11 increased the removal capability (Figure 3(B), P < 0.001) and invasiveness (Figure 3(C), P < 0.001) of 786–0 and A498 cells, in comparison with the cells with miR-190a-5p mimic + oe-NC. These results indicated that overexpression of GDF11 could retrogress the inhibition of proliferation, removal capability, and invasiveness which is caused by miR-190a-5p.

Figure 3.

Effects of GDF11 for cell viability. (A1) Effects of GDF11 for cell proliferation in 786–0 cells. (A2) Effects of GDF11 for cell proliferation in A498 cells. (B) Effects of GDF11 for migration of 786–0 and A498 cell lines. (C) Effects of GDF11 for invasion of 786–0 and A498 cell lines. *** P < 0.001.

Discussion

Since RCC is a common tumor in the urinary system, many patients have tumor metastasis and recurrence after surgery.^21,22 Studies have confirmed that abnormal expression of miRNA has been found in several tumors, including RCC, and miRNA plays a crucial role in the occurrence and progression of RCC.^23,24 Also, it shows good research potential in tumor development, providing a new way for diagnosis and therapy of RCC. Current research discovered that miR-190a-5p was decreased in RCC tissues compared to adjacent tissues. Based on the mean miR-190a-5p level in tumor tissues, RCC cases were divided into low and high groups. Patients in the low group had more lymph node metastasis, high TNM stages, and large tumor size. Previous studies suggested that high miR-190 levels were closely related to better outcomes of renal cancer.¹⁹

In this study, the 5-year overall survival frequency of RCC cases was 68.77%; RCC patients with high miR-190a-5p levels had a longer survival time than patients in the low-levels group. Cox regression analysis demonstrated that low miR-190a-5p level and high TNM stage were independent risk factors for worse RCC prognosis. miR-190a-5p mimics were transfected into 786–0 and A498 cells; overexpressed miR-190a-5p could suppress the proliferation, removal capability, and invasiveness. Similar results were revealed in previous research. Yu et al.²⁵ suggested that miR-190 was reduced in estrogen receptor (ER)-BC cells than ER + cells. Elevated miR-190 could suppress the proliferation and decrease the percentage of the S phase of ER-BC cells. Reduced miR-190 could promote the EMT and metastasis of BC via SMAD2.²⁶ However, miR-190 was up-regulated in gastric cancer tissues.¹² This difference might be induced by the type of tumors.

We selected target genes from TargetScanHuman, StarBase, and miRDB databases, and found five intersection genes. We selected GDF11 for the following function analysis. GDF11 is upregulated in mice with renal diseases and promotes the proliferation and EMT of epithelial cells via SMAD3.²⁷ Therefore, we speculated that GDF11 might contribute to RCC development. Elevated GDF11 levels were discovered in 786–0 and A498 cells compared with HKb-20 cells. GDF11 was directly targeting to miR-190a-5p. Overexpressed GDF11 was transfected into miR-190a-5p mimic cells. Proliferation, removal capability, and invasiveness of 786–0 and A498 cells were significantly facilitated by miR-190a-5p mimic + oeGDF11. Increased GDF11 could promote the proliferation, migration, and invasion of 786–0 and A498 cells, which is induced by overexpressed miR-190a-5p. All of these results suggested that oeGDF11 could invert the inhibition of proliferation, removal capability, and invasiveness of 786–0 and A498 cells caused by miR-190a-5p. Current results were confirmed with previous studies. Pons et al.²⁷ suggested that GDF11 was elevated in kidney tissues with acute injury. High GDF11 could induce EMT and kidney injury in mice models. Gu et al.²⁸ suggested that GDF11 level was positively with the differentiation and proliferation of esophageal cancer cells.

Shortcomings of the current study should be mentioned. First, only one population and two cell lines were used in this study; other populations and more cell lines should be gathered for prognostic and functional analyses. Second, subgroup analysis based on different RCC subtypes was not performed due to the sample size not being large enough. Third, the influences of miR-190a-5p for the downstream signaling pathway of GDF11, apoptosis, inflammatory responses, and other responses were not analyzed in this study. Also, the influence of miR-190a-5p for RCC development was not certified in animal models. Therefore, further studies focused on the function analysis of miR-190a-5p should be certified in other cell lines and animal models in the future.

In a word, reduced miR-190a-5p in RCC tissues predicted worse outcomes for RCC patients. Overexpressed miR-190a-5p could restrain the proliferation, removal capability, and invasiveness of RCC cells via suppressing GDF11.

Supplemental Material

sj-docx-1-jbm-10.1177_03936155241290251 - Supplemental material for Prognostic value of miR-190a-5p in renal cell cancer and its regulatory effect on tumor progression

Supplemental material, sj-docx-1-jbm-10.1177_03936155241290251 for Prognostic value of miR-190a-5p in renal cell cancer and its regulatory effect on tumor progression by Jun Liu, Lili Zhang, Zhancheng Wang, Hu Li, Bo Wang and Xiaoqiang Liu in The International Journal of Biological Markers

Supplemental Material

sj-docx-2-jbm-10.1177_03936155241290251 - Supplemental material for Prognostic value of miR-190a-5p in renal cell cancer and its regulatory effect on tumor progression

Supplemental material, sj-docx-2-jbm-10.1177_03936155241290251 for Prognostic value of miR-190a-5p in renal cell cancer and its regulatory effect on tumor progression by Jun Liu, Lili Zhang, Zhancheng Wang, Hu Li, Bo Wang and Xiaoqiang Liu in The International Journal of Biological Markers

Footnotes

Acknowledgments

Not Applicable.

Ethical considerations

Ratification was offered by the Institutional Review Board of Tianjin Medical University General Hospital.

Consent to participate

Signed informed consent was provided by all patients before enrolling in research.

Consent for publication

Not applicable.

Data availability

All data generated or analyzed during this study are included in this article and its supplementary material files. Further enquiries can be directed to the corresponding author.

Declaration of conflicting interests

The authors declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.

Funding

The authors disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: The study was funded by National Natural Science Funds of China (82171594).

ORCID iD

Xiaoqiang Liu

Supplemental material

Supplemental material for this article is available online.

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