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Open access

Research article

First published 2014-11

A link partition approach for finding overlapping functional modules in the transcriptional regulatory network

Qingyu Zou, Fu Liu, Tao Hou [...]

Bio-Medical Materials and Engineering

Open access

Research article

First published 2012-06

Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling

Wenyuan Li, Chao Dai, Chun-Chi Liu [...]

Journal of Computational Biology

Open access

Research article

First published 2014

A Pan-Cancer Modular Regulatory Network Analysis to Identify Common and Cancer-Specific Network Components

Sara A. Knaack, Alireza Fotuhi Siahpirani, Sushmita Roy

Cancer Informatics

Open access

Research article

First published 2014

INsPeCT: INtegrative Platform for Cancer Transcriptomics

Piyush B. Madhamshettiwar, Stefan R. Maetschke, Melissa J. Davis [...]

Cancer Informatics

Retricted access

Research article

First published 2020-08

Exploring a Drosophila Transcription Factor Interaction Network to Identify Cis-Regulatory Modules

A.K.M. Firoj Mahmud, Doo Yang, Per Stenberg [...]

Journal of Computational Biology

Free access

Research article

First published 2021-12

Apolipoprotein D as a Potential Biomarker and Construction of a Transcriptional Regulatory-Immune Network Associated with Osteoarthritis by Weighted Gene Coexpression Network Analysis

Yong Qin, Jia Li, Yonggang Zhou [...]

CARTILAGE

Retricted access

Research article

First published 2015-04

Inferring Genome-Wide Functional Modulatory Network: A Case Study on NF-κB/RelA Transcription Factor

Xueling Li, Min Zhu, Allan R. Brasier [...]

Journal of Computational Biology

Free access

Research article

First published 2010-6

Myc

Thi V. Bui, Joshua T. Mendell

Genes & Cancer

Retricted access

Research article

First published 2003-09

PAINT: A Promoter Analysis and Interaction Network Generation Tool for Gene Regulatory Network Identification

Rajanikanth Vadigepalli, Praveen Chakravarthula, Daniel E. Zak [...]

OMICS: A Journal of Integrative Biology

Retricted access

Research article

First published

Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods

Daniel Marbach, Thomas Schaffter, Claudio Mattiussi [...]

Journal of Computational Biology

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