Abstract
Background
Cervical cancer (CC) is a leading cause of death among women worldwide, predominantly driven by high-risk human papillomavirus infection. MicroRNAs (miRNAs) regulate gene expression and may serve as noninvasive biomarkers for diagnosis, prognosis, and treatment monitoring in CC.
Objective
This study aimed to identify circulating miRNAs linked to HPV-related CC and evaluate their potential as biomarkers for prognosis and response to concurrent chemoradiotherapy (CRT).
Methods
In this prospective study, plasma samples from 36 CC patients were collected before and after treatment. Five miRNAs (hsa-miR-1-3p, hsa-miR-10a-5p, hsa-miR-34a-5p, hsa-miR-34c-5p, and hsa-miR-409-3p) were selected via literature review and pathway analysis. miRNA levels were quantified by quantitative polymerase chain reaction and normalized to hsa-miR-16. Associations with clinicopathological features and survival were analyzed statistically.
Results
Pathway analysis confirmed the involvement of selected miRNAs in cancer and HPV-related pathways, including PI3K-Akt and MAPK signaling. Post-CRT, significant downregulation of hsa-miR-34a-5p, hsa-miR-34c-5p, and hsa-miR-409-3p was observed (
Conclusions
Circulating miRNAs, especially hsa-miR-34a-5p, hsa-miR-409-3p, and hsa-miR-34c-5p hold promise as noninvasive biomarkers for monitoring treatment efficacy in CC. Larger studies are needed to validate these findings and clarify their prognostic value.
Introduction
Cervical cancer (CC) is a major cause of death among women globally and poses a significant health challenge. 1 According to the World Health Organization's most recent data, over 90% of CC-related deaths happened in low- or middle-income nations in 2018, and there were around 570,000 new instances of CC detected worldwide.2,3 Cervical cancer is a significant public health issue, particularly in areas where women do not have sufficient access to comprehensive medical care. The uncontrolled growth and division of cervical tissue cells, which strays from the normal cell division process, can lead to cervical intraepithelial neoplasia (CIN), classified into stages CIN-I to CIN-III. CIN-I represents mild dysplasia, where some cells show abnormal changes. As the condition progresses to CIN-II, there is moderate dysplasia with a greater number of abnormal cells. Finally, CIN-III indicates severe dysplasia, where the abnormal cells cover a significant portion of the cervical epithelium. If left untreated, these changes can ultimately progress to CC, a form of malignant tumor.4,5 Furthermore, individuals with advanced stages of CC experience a significant disease burden and have a poor prognosis. 6
The development of CC is triggered by infection with high-risk human papillomavirus (HR-HPV). High-risk HPV infections, especially those caused by HPV types 16 and 18, have been recognized as major contributors to the development of CC in many individuals. 7 The HPV genome encodes several oncoproteins, notably E6 and E7, which are crucial for HPV carcinogenesis. E6 interacts with E6-AP, leading to the degradation of the p53 tumor suppressor, while E7 binds to the retinoblastoma (Rb) protein, disrupting the Rb-E2F pathway. Together, these actions promote genetic instability and advance CC progression. 6
Despite progress in treatment and early detection, there are still significant gaps in the prognosis and monitoring of CC. 8 For example, research by Liu et al. underscored the significance of anemia and tumor size as key indicators of overall survival rates in patients undergoing surgery and concurrent chemoradiotherapy (CRT) for CC. 9 Furthermore, a review by Arip et al. pointed out the necessity for extensive clinical studies to confirm the relevance of newly identified biomarkers. 10 Additionally, Ding et al. created a machine learning model based on microRNAs (miRNAs) for survival prediction, revealing that existing clinical features do not provide adequate accuracy for prognosis predictions. 8 Current methods for controlling and monitoring the effects of chemotherapy and radiotherapy in CC patients include imaging techniques such as MRI and CT scans, blood tests for tumor markers, and histopathological evaluations. 11
There is a growing focus on noninvasive liquid biopsy (LB) as a complementary and potentially alternative method to address existing limitations in current diagnostic approaches and disease management.12,13 Liquid biopsy is a technique that extracts tumor-derived biomarkers from various body fluids, including blood, urine, saliva, feces, cerebrospinal fluid, and cervical-vaginal fluid. This method can detect several circulating tumor components, such as circulating tumor cells, circulating tumor DNA, messenger RNA (mRNA), noncoding RNA, extracellular vesicles, and tumor-educated platelets. 14 Essentially, LB serves as a noninvasive diagnostic tool that facilitates the early detection and monitoring of cancer.12,13,15 Noncoding RNAs play crucial roles in regulating gene expression and are classified into various types, with miRNAs. 16 These molecules are short, single-stranded RNAs that are about 22 nucleotides long and play a role in negatively regulating posttranscriptional gene expression. They achieve this by targeting the 3′ untranslated regions of mRNAs, which results in either the degradation of the mRNAs or the inhibition of their translation. 17 Changes in the expression levels of various miRNAs have been linked to the progression of CC. 18 In recent years, numerous studies have identified alterations in these molecules across various diseases, underscoring their significance in understanding multiple health conditions. However, there have been relatively few investigations that provide a thorough analysis of the role of miRNAs in the management and treatment monitoring of CC. 19
The primary aim of this study is to identify specific miRNAs associated with human HPV infection in CC. We will evaluate these miRNAs as potential biomarkers for prognosis and treatment monitoring. By establishing a link between specific miRNA profiles and clinical outcomes in CC patients, this research seeks to improve prognosis and inform personalized treatment strategies.
Materials and methods
Ethical approval and compliance
This prospective study was conducted in accordance with the Declaration of Helsinki (1975, revised 2024). The study protocol received approval from the Research Ethics Committee of Tabriz University of Medical Sciences (Tabriz, Iran; approval code: IR.TBZMED.REC.1400.438; date of approval: 2 August 2021). The reporting of this observational study conforms to the STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) guidelines. 20 All patient details (including names, hospital IDs, and contact information) were de-identified prior to analysis to protect privacy. Clinical data were anonymized using study-specific codes, with the key stored separately in password-protected files accessible only to the principal investigator. Only de-identified aggregate data are presented in this publication. Clinical trial number: not applicable. During manuscript preparation, AI-assisted tools (Microsoft Copilot) were used exclusively for grammar checking and language refinement. All scientific content, data interpretation, and conclusions remain entirely the work of human authors.
Selection method of miRNAs related to HPV-related CC
This study conducted a comprehensive review of miRNAs dysregulated in CC patients (Supplemental Table 1). We identified five specific miRNAs: hsa-miR-1-3p,10,21 hsa-miR-10a-5p,22,23 hsa-miR-34a-5p,
24
hsa-miR-34c-5p,
25
and hsa-miR-409-3p,26,27 based on their established roles in CC pathogenesis. To assess their association with CC and HPV infection pathways, we performed an
Human specimens
This prospective observational study compared miRNA expression before and after CRT in 36 newly diagnosed CC patients after obtaining informed consent. Patients were consecutively enrolled between September 2021 and September 2024. Inclusion criteria for the study required participants to have a histologically confirmed diagnosis of primary CC and to be scheduled for CRT without any prior treatment. Patients were excluded if they were pregnant or had concurrent malignancies. A 6 ml blood samples were collected from patients at three medical centers: Tabriz Madani Hospital (affiliated with Tabriz University of Medical Sciences), the Cancer Institute of Tehran University of Medical Sciences, and Ardabil Alavi Hospital (affiliated with Ardabil University of Medical Sciences). Pretreatment samples were obtained from all patients, and posttreatment samples were successfully collected from 25 patients. The remaining 11 patients did not provide posttreatment samples due to death during follow-up (primarily in advanced-stage cases), loss to contact, or withdrawal of consent.
Following collection, blood samples were centrifuged at 3000
RNA extraction and miRNA quantification by reverse transcription quantitative polymerase chain reaction
Total RNA including miRNAs was isolated from plasma samples using magnetic beads specifically optimized for small RNA extraction (Zybio, China), following the manufacturer's protocol to ensure efficient recovery of miRNAs. The concentration and purity of the isolated RNA were measured using a NanoDrop ND-2000 spectrophotometer (Thermo Fisher Scientific), assessing absorbance ratios (A260/A280 and A260/A230) to confirm RNA integrity suitable for downstream applications.
Reverse transcription (RT) of miRNAs into complementary DNA (cDNA) was performed using a dedicated cDNA synthesis kit (Bon Yakhteh, Iran), optimized for short RNA templates like miRNAs. This RT step included the use of specific stem-loop or sequence-specific primers tailored for each miRNA of interest to enhance specificity.
Quantitative polymerase chain reaction (qPCR) analysis was performed using a SYBR Green fluorescence detection system (SYBR Green Premix Kit, Amplicon, Denmark) on a QIAquant 96 2plex real-time PCR instrument (QIAGEN). Five target miRNAs—hsa-miR-1-3p, hsa-miR-10a-5p, hsa-miR-34a-5p, hsa-miR-34c-5p, and hsa-miR-409-3p—were amplified using specific forward primers paired with a universal reverse primer designed for miRNA amplification. Primer sequences are detailed in Supplemental Table 2.The relative expression levels of target miRNAs were calculated using the 2ΔΔCt method, normalizing Ct values to hsa-miR-16 and comparing to control or baseline samples. Each qPCR reaction and RT reaction were performed in triplicate to ensure reproducibility.
Statistical analysis
Statistical analyses were performed using SPSS v28 (IBM) and Prism 8.3 (GraphPad). Continuous variables are presented as mean ± standard deviation, and categorical variables as frequencies (%). Normality was assessed using Shapiro–Wilk tests. For the paired cohort (
For survival analysis, Kaplan–Meier curves with log-rank tests compared survival between high/low miRNA groups (stratified by median ΔCt), using first sampling date as time-zero for all patients (
Given the biological and clinical heterogeneity between patients with and without posttreatment samples, all treatment-related miRNA analyses were restricted to the 25 patients with paired samples. The remaining 11 patients were excluded from these analyses due to the inability to assess treatment effects without posttreatment timepoints.
Results
Pathway analysis of selected miRNAs using DIANA-miRPath v40
The analysis utilized the DIANA-miRPath v4.0 webserver to identify pathways associated with the selected miRNAs. Results were exported to Excel for further analysis, organizing data by the number of target genes (Target Genes (n)) to prioritize pathways with the highest target counts. The top five pathways identified, based on the number of target genes, are:
These results indicate a significant association between the selected miRNAs and key pathways involved in cancer development and HPV infection, suggesting their potential roles in CC pathogenesis.
Patient characteristics
The clinicopathological characteristics of these patients are summarized in Table 1. The cohort comprised 36 CC patients with a mean age of 50.85 ± 12.79 years, distributed across Federation of Gynecology and Obstetrics (FIGO) stages as follows: Stage I (38.8%,
Associations between baseline miRNA level (ΔCt) and clinicopathological features.
The FIGO stage showed a statistically significant association with hsa-miR-1-3p expression (
FIGO: International Federation of Gynecology and Obstetrics staging system; miRNA: microRNA. Bold value indicates statistical significance (
Posttreatment changes in oncogenic miRNA expression profiles in cc patients
In a cohort of 25 cervical CC patients with both pretreatment and posttreatment samples, we observed significant alterations in the expression levels of specific oncogenic miRNAs following CRT. Notably, three miRNAs—hsa-miR-34a-5p, hsa-miR-34c-5p, and hsa-miR-409-3p—exhibited statistically significant reductions in expression levels posttreatment (

Treatment-associated changes in plasma oncogenic microRNA (miRNA) expression following chemoradiotherapy (CRT) in cervical cancer (CC) patients (
Association between miRNA profiles and clinicopathological features
Our analysis revealed distinct miRNA expression profiles with specific clinical associations (Table 1). Most notably, baseline hsa-miR-1-3p levels showed significant variation by FIGO stage (
Multivariate analysis revealed only marginal associations between clinicopathological factors and miRNA levels. Federation of Gynecology and Obstetrics stage showed a trend with miR-1-3p (
Kaplan–Meier survival analysis of miRNA expression
Analysis of baseline (
Discussion
Cervical cancer is a genetic and pathological condition where the dysregulation of miRNAs may significantly influence various characteristics associated with cancer. 28 Numerous techniques, such as the Pap smear, colposcopy, and biopsy, are currently widely utilized to diagnose precancerous cervical lesions. 29 Consequently, this malignancy continues to be one of the most significant health concerns globally, as most HR HPV infections are asymptomatic for one to two years. 30 The dysregulation of miRNAs has been well-documented across various stages in patients with underdeveloped CC, highlighting their essential role in the disease's progression. 31 Current treatments for CC, including surgery, radiotherapy, chemotherapy, and immunotherapy, still result in 30%–60% of patients developing recurrence or metastasis due to limitations in follow-up monitoring.32,33 Standard imaging may not detect minimal residual disease (MRD), risking undertreatment, while delayed tumor resolution after concurrent CRT can lead to overtreatment. 34 Liquid biopsy tools show promise in identifying MRD and managing treatment. Our study demonstrates the efficacy of concurrent CRT by analyzing changes in oncogenic HPV-related miRNA. These findings could enhance imaging assessments and support better monitoring of treatment efficacy and recurrence risk. Ding et al. study demonstrated the efficacy of machine learning models utilizing miRNA profiles for survival predictions in CC, reinforcing the potential of miRNAs to improve prognostic accuracy. 8

Kaplan–Meier survival analysis of posttreatment microRNA (miRNA) expression levels (

Kaplan–Meier survival analysis of baseline microRNA (miRNA) expression levels (
The pathway analysis conducted using DIANA-miRPath v4.0 highlights the significant roles that selected miRNAs play in critical biological pathways associated with CC and HPV infection. The identification of pathways in CC as the most enriched pathway, with 103 target genes, underscores the complexity of cancer biology and the multifaceted roles of miRNAs in regulating oncogenic processes. This finding suggests that these miRNAs may contribute to various mechanisms involved in tumorigenesis, including cell proliferation, apoptosis, and metastasis.
The PI3K-Akt signaling pathway and MAPK signaling pathway are also notable, with 70 and 66 target genes, respectively. These pathways are pivotal in cellular growth and survival, emphasizing the importance of miRNA dysregulation in cancer progression. The involvement of these pathways aligns with existing literature that links aberrant signaling to cancer aggressiveness and treatment resistance.
The significant reductions in the expression levels of hsa-miR-34a-5p, hsa-miR-34c-5p, and hsa-miR-409-3p posttreatment suggest that these miRNAs may play a role in the response to treatment. The observed changes in expression levels indicate potential involvement in the mechanisms of treatment efficacy and resistance. These findings support the hypothesis that specific miRNAs could serve as biomarkers for monitoring treatment responses, allowing for personalized therapeutic approaches in CC management.
The distinct miRNA expression profiles associated with FIGO stage highlight the potential for miRNAs to serve as indicators of disease progression. The significant variation in hsa-miR-1-3p levels across stages suggests a role in tumor biology that warrants further exploration. The trend observed in multivariate analysis points to the complexity of interactions between FIGO stages and baseline hsa-miR-1-3p expression level, emphasizing the need for comprehensive models to elucidate these relationships.
The limited explanation of clinical variables on miRNA expression suggests that additional factors, possibly including genetic and epigenetic modifications, may play critical roles in miRNA regulation and should be considered in future studies. 35
The Kaplan–Meier survival analysis, revealing no significant associations between miRNA expression levels and patient survival outcomes, raises important questions regarding the prognostic utility of these miRNAs. While prior studies have indicated potential correlations between specific miRNAs and survival in various cancers, our findings suggest that miRNA expression alone may not be sufficient to predict outcomes in CC patients.36,37 This underscores the necessity of integrating miRNA profiles with other clinical and molecular factors to develop more accurate prognostic models.
This study provides a robust foundational contribution to the field by identifying differentially expressed circulating miRNAs (notably hsa-miR-34a-5p, hsa-miR-409-3p, and hsa-miR-34c-5p) with clear biological plausibility based on prior functional evidence. Strengths include rigorous analytical methods, careful matching of clinical groups, and a focus on noninvasive biomarkers that have potential diagnostic and therapeutic relevance. Although further work is warranted (
A limitation of our study is the relatively small sample size, which may have resulted in reduced statistical power. Additionally, the relatively short follow-up period and the limited number of participants, combined with the absence of recurrence evaluation, constrain both the statistical power and the duration of the survival analyses presented. Further research is warranted to elucidate the underlying mechanisms by which these miRNAs influence or are influenced by the observed clinicopathological features. Prospective studies with larger patient cohorts are needed to validate these findings and assess the clinical utility of these miRNAs as biomarkers in CC management. Additionally, it is essential to specify the selection of miRNAs using extensive datasets and to conduct enrichment analyses alongside principal component analysis. Understanding the functional roles of these miRNAs in CC biology may reveal new therapeutic targets or strategies for improving patient outcomes.
Conclusion
Our findings suggest that plasma levels of hsa-miR-34a-5p, hsa-miR-34c-5p, and hsa-miR-409-3p may decrease following CRT in CC patients. While these miRNA changes could potentially serve as treatment response biomarkers, our observational study design and limited sample size preclude definitive conclusions. Further validation in larger, controlled cohorts is needed to establish their clinical utility.
Supplemental Material
sj-docx-1-sci-10.1177_00368504251380636 - Supplemental material for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study
Supplemental material, sj-docx-1-sci-10.1177_00368504251380636 for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study by Masoumeh Parvizi, Mohammad Taghizadeh-Teymorloei, Maryam Vaezi, Masoumeh Bakhshandeh, Noushin Mobaraki-Asl, Ebrahim Esmati, Reza Eghdam-Zamiri, Farhad Jeddi and Abbas Karimi in Science Progress
Supplemental Material
sj-docx-2-sci-10.1177_00368504251380636 - Supplemental material for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study
Supplemental material, sj-docx-2-sci-10.1177_00368504251380636 for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study by Masoumeh Parvizi, Mohammad Taghizadeh-Teymorloei, Maryam Vaezi, Masoumeh Bakhshandeh, Noushin Mobaraki-Asl, Ebrahim Esmati, Reza Eghdam-Zamiri, Farhad Jeddi and Abbas Karimi in Science Progress
Supplemental Material
sj-docx-3-sci-10.1177_00368504251380636 - Supplemental material for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study
Supplemental material, sj-docx-3-sci-10.1177_00368504251380636 for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study by Masoumeh Parvizi, Mohammad Taghizadeh-Teymorloei, Maryam Vaezi, Masoumeh Bakhshandeh, Noushin Mobaraki-Asl, Ebrahim Esmati, Reza Eghdam-Zamiri, Farhad Jeddi and Abbas Karimi in Science Progress
Supplemental Material
sj-docx-4-sci-10.1177_00368504251380636 - Supplemental material for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study
Supplemental material, sj-docx-4-sci-10.1177_00368504251380636 for Effects of chemoradiotherapy on plasma oncogenic miRNAs as biomarkers in cervical cancer patients: A prospective observational study by Masoumeh Parvizi, Mohammad Taghizadeh-Teymorloei, Maryam Vaezi, Masoumeh Bakhshandeh, Noushin Mobaraki-Asl, Ebrahim Esmati, Reza Eghdam-Zamiri, Farhad Jeddi and Abbas Karimi in Science Progress
Footnotes
Acknowledgment
The authors would like to thank the personnel of the Molecular Labs at the Faculty of Advanced Medical Sciences, Tabriz University of Medical Sciences, for their support. During manuscript preparation, AI-assisted tools (Microsoft Copilot) were used exclusively for grammar checking and language refinement. All scientific content, data interpretation, and conclusions remain entirely the work of human authors.
Ethics approval
The systematic review and meta-analysis utilized published data from indexed journals. The analysis was conducted under ethical approval IR.TBZMED.REC.1400.438.
Patient consent
Written informed consent was obtained from all patients participating in the study.
Author contributions
Masoumeh Parvizi contributed to data curation; investigation; methodology; software; validation; writing—original draft; and writing—review and editing. Mohammad Taghizadeh-Teymorloei contributed to data curation; investigation; methodology; software; validation; writing—original draft; and writing—review and editing. Masoumeh Bakhshandeh, Maryam Vaezi, Noushin Mobaraki-Asl, Ebrahim Esmati, and Reza Eghdam-Zamiri contributed to investigation and writing—review and editing. Farhad Jeddi contributed to investigation; data curation, supervision, writing—review and editing. Abbas Karimi contributed to conceptualization; data curation; funding acquisition; investigation; methodology; project administration; supervision; validation; and writing—review and editing.
Funding
The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This work is part of a PhD project supported by the Tabriz University of Medical Sciences under grant number 67334.
Declaration of conflicting interests
The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
Data availability
The data that support the findings of this study are available from the corresponding author.
Supplemental material
Supplemental material for this article is available online.
References
Supplementary Material
Please find the following supplemental material available below.
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