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Research article

First published 2020-3

Characterizing the Macrophage Response to Immunomodulatory Biomaterials Through Gene Set Analyses

Sarah E. Blatt, Emily B. Lurier, Gregory E. Risser [...]

Tissue Engineering Part C: Methods

Open access

Research article

First published 2012

The Core Mouse Response to Infection by Neospora Caninum Defined by Gene Set Enrichment Analyses

John Ellis, Stephen Goodswen, Paul J Kennedy [...]

Bioinformatics and Biology Insights

Open access

Research article

First published 2025

Gene Set Enrichment Analysis in Zebrafish Embryos Is Susceptible to False-Positive Results in the Absence of Differentially Expressed Genes

John DH Stead, Hyojin Lee, Andrew Williams [...]

Bioinformatics and Biology Insights

Open access

Research article

First published 2008

A Biological Evaluation of Six Gene Set Analysis Methods for Identification of Differentially Expressed Pathways in Microarray Data

Irina Dinu, Qi Liu, John D. Potter [...]

Cancer Informatics

Open access

Research article

First published 2014

TEGS-CN: A Statistical Method for Pathway Analysis of Genome-wide Copy Number Profile

Yen-Tsung Huang, Thomas Hsu, David C. Christiani

Cancer Informatics

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Research article

First published 2016-03

GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing,RNAseq and Microarray Data

Shani Ben-Ari Fuchs, Iris Lieder, Gil Stelzer [...]

OMICS: A Journal of Integrative Biology

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Research article

First published 2024-12

A Core NRF2 Gene Set Defined Through Comprehensive Transcriptomic Analysis Predicts Selective Drug Resistance and Poor Multicancer Prognosis

George Luo, Harshita Kumar, Kristin Aldridge [...]

Antioxidants & Redox Signaling

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Research article

First published 2007-09

Gene Set Enrichment Analyses Revealed Several Affected Pathways in Niemann-Pick Disease Type C Fibroblasts

Aloys De Windt, Myriam Rai, Leena Kytömäki [...]

DNA and Cell Biology

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Research article

First published 2009-12

Gene set enrichment analysis made simple

Rafael A Irizarry, Chi Wang, Yun Zhou [...]

Statistical Methods in Medical Research

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Research article

First published 2016-2

The limitations of simple gene set enrichment analysis assuming gene independence

Pablo Tamayo, George Steinhardt, Arthur Liberzon [...]

Statistical Methods in Medical Research

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