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Research article

First published 2010

A Comparative Taxonomy of Parallel Algorithms for RNA Secondary Structure Prediction

Ra'ed M. Al-Khatib, Rosni Abdullah, Nur'Aini Abdul Rashid

Evolutionary Bioinformatics

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Research article

First published

Novel and Efficient RNA Secondary Structure Prediction Using Hierarchical Folding

Hosna Jabbari, Anne Condon, Shelly Zhao

Journal of Computational Biology

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Research article

First published 2003-12

Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs

Samuel Ieong, Ming-Yang Kao, Tak-Wah Lam [...]

Journal of Computational Biology

Open access

Research article

First published 2013

A Tool Preference Choice Method for RNA Secondary Structure Prediction by SVM with Statistical Tests

Chiou-Yi Hor, Chang-Biau Yang, Chia-Hung Chang [...]

Evolutionary Bioinformatics

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Research article

First published 2024-06

Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction

Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk [...]

Journal of Computational Biology

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Research article

First published 2006-03

Consensus Folding of Unaligned RNA Sequences Revisited

Vineet Bafna, Haixu Tang, Shaojie Zhang

Journal of Computational Biology

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Research article

First published 1994-9

Intracellular Susceptibility to Ribozymes in a Tethered Substrate—Ribozyme Provirus Model Is Not Predicted by Secondary Structures of Human Immunodeficiency Virus Type 1 RNAs in Vitro

Boro DROPULIĆ, Kuan-Teh Jeang

Nucleic Acid Therapeutics

Open access

Research article

First published 2009

Predicting Consensus Structures for RNA Alignments via Pseudo-Energy Minimization

Junilda Spirollari, Jason T.L. Wang, Kaizhong Zhang [...]

Bioinformatics and Biology Insights

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Research article

First published 1995-03

Optimization and Performance Analysis of a Massively Parallel Dynamic Programming Algorithm for Rna Secondary Structure Prediction

Bruce A. Shapiro, Jih-Hsiang Chen, Tim Busse [...]

The International Journal of High Performance Computing Applications

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Research article

First published 2000-08

RNA Pseudoknot Prediction in Energy-Based Models

Rune B. Lyngs⊘, Christian N. S. Pedersen

Journal of Computational Biology

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