Abstract
Chimeric antigen receptor (CAR) T-cell therapy is a rapidly developing method for adoptive immunotherapy of tumours in recent years. CAR T-cell therapies have demonstrated unprecedented efficacy in the treatment of patients with haematological malignancies. A 90% complete response (CR) rate has been reported in patients with advanced relapse or refractory acute lymphoblastic leukaemia, while >50% CR rates have been reported in cases of chronic lymphocytic leukaemia and partial B-cell lymphoma. Despite the high CR rates, a subset of the patients with complete remission still relapse. The mechanism of development of resistance is not clearly understood. Some patients have been reported to demonstrate antigen-positive relapse, whereas others show antigen-negative relapses. Patients who relapse following CAR T-cell therapy, have very poor prognosis and novel approaches to overcome resistance are required urgently. Herein, we have reviewed current literature and research that have investigated the strategies to overcome resistance to CAR T-cell therapy.
Introduction
Chimeric antigen receptors (CARs) are synthetic tumour-specific receptors that are genetically reprogrammed
Basic structure and development of CAR T-cells
CAR T-cell therapy is a cellular therapy that redirects a patient’s T cells to specifically target and destroy tumour cells. CARs are proteins expressed on the surface of T and natural killer (NK) cells, which contain extracellular binding domains, a hinge region that mediates the linkage of extracellular to transmembrane domains, a transmembrane domain and an intracellular signaling domain (Figure 1).16–20 In 1987, Kuwana

Schematic representation of CAR structure. CAR T cells are composed of three parts: (1) an scFv, (2) a transmembrane domain, and (3) a signal transduction domain of the TCR. First-generation CARs used a CD3ζ as the signal transduction domain of the TCR, whereas second-generation CARs include additional co-stimulatory signaling domains (CD28 or 4-1BB). Third-generation CARs consist of two distinct co-stimulatory domains, such as both CD28 and 4-1BB. Fourth-generation CARs are additionally armored with genes that enable, for example, the expression of cytokines.
Efficacy of CAR T cells in the treatment of haematological malignancies
Haematological malignancies are one of the most common cancers among patients in China. Presently, haematological malignancies remain incurable and have a high recurrence rate and mortality. In recent years, novel gene and targeted therapies have emerged for the treatment of patients with haematological malignancies; however, clinical remission rates are limited. In 2013, the journal
B-ALL
CAR T-cell therapy has emerged as a highly effective therapy for patients with relapsed or refractory B-ALL with previously limited treatment options. The therapy was reported to demonstrate complete responses (CRs) ranging from 60% to 90% (Table 1).2,7,48–53 Relapse rates of approximately 30–50% were reported in patients with B-ALL, with the majority being CD19-negative relapses.
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In a phase II, single-cohort, 25-centre global study, 75 patients received an infusion of tisagenlecleucel and were followed up for at least 3 months; the overall remission rate was 81%.
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A total of 45 patients (60%) had complete remission and 16 (21%) had complete remission with incomplete haematological recovery. Among the patients with complete remission, 17 experienced relapse before receiving additional anticancer therapy. Characterisation of CD19 status at the time of relapse showed that 1 patient had CD19-positive and 15 had CD19-negative recurrence, whereas six patients had unknown status. Turtle
Summary of CAR T cells in the treatment of B-ALL, B-NHL and CLL.
B-ALL, B-cell acute lymphoblastic leukaemia; B-NHL, B-cell non-Hodgkin lymphoma; CAR, chimeric antigen receptor; CLL, chronic lymphocytic leukaemia; CR, complete remission; DLBCL, diffuse large B-cell lymphoma; FL, follicular lymphoma; PR, partial remission; SD, stable disease.
B-cell non-Hodgkin lymphomas and CLL
Previous research has shown remarkable rates of complete and durable remission in patients with CLL56–59 and B-cell non-Hodgkin lymphoma (B-NHL).23,56–61 CAR T-cell therapy has been approved for the treatment of lymphoma in adults, with a lower remission rate of approximately 50–70%.6,62–64 Furthermore, antigen loss has also been observed in such patients.65,66 In a multicentre, phase II trial, 111 patients with histologically confirmed diffuse large B-cell lymphoma, primary mediastinal B-cell lymphoma, or transformed follicular lymphoma were enrolled, of which 101 received Axicabtagene Ciloleucel, an autologous anti-CD19 CAR T-cell therapy. The objective response rate observed in the patients was 82%, and the CR rate was 54%. At a median follow-up of 15.4 months, 42% of the patients continued to demonstrate a response, with 40% showing CR.
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Another clinical trial enrolled 28 adult patients, wherein complete remission occurred in 6 out of 14 patients with diffuse large B-cell lymphoma and in 10 out of 14 patients with follicular lymphoma.59,66 Porter
Underlying mechanisms of resistance
Two main mechanisms have been recognised in relapse following CAR T-cell therapy, including antigen-negative and antigen-positive relapses.
Antigen-positive relapse
Antigen-positive relapse has been assumed to be due primarily to short persistence of CAR T cells
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; however, it can also occur in association with a suppressive tumour microenvironment.
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The reasons for loss of CAR-T cell persistence are complex and might be difficult to determine in individual patients. According to a trial by Park
Antigen-negative relapse
The reason for antigen-negative relapse was unclear. Since the antigen-negative relapse has been considered a major barrier to CAR-T therapies, studies have uncovered multiple mechanisms responsible for the antigen-negative relapse, which are described below.
Epitope-masking
Ruella

Mechanisms of resistance to CAR-T cell therapy. (A) Lentiviral modification of a single leukemic cell allowed for joint CAR19 and CD19 expression on their cell surface, effectively masking the CD19 epitope from CAR T cells. (B) Tumour cells can switch to a genetically related but phenotypically different disease. (C) Tumour cells, through genetic mutations, can either completely lose CD19 receptor expression or modify the CD19 receptor that lack the extracellular epitopes recognised by CAR T cells. (D) Tumour cells downregulate the surface target antigen to levels below those needed for CAR T cells activation.
Lineage switch
Lineage switch occurs when a patient experiences relapse with a genetically related but phenotypically different malignancy (Figure 2B), which might be a mechanism for antigen loss after CAR T-cell therapy observed in clinical trials.9,69–72 Evans
Receptor genetic mutations
Acquired mutations and alternatively spliced CD19 alleles in the malignant B cells are other mechanisms for CD19-negative relapse following CD19-targeted CAR T-cell therapy (Figure 2C). Sotillo
Antigen downregulation
Partial antigen loss may be considered a mechanism for resistance to CAR T-cell therapy due to antigen downregulation (Figure 2D).11–15 During the course of antigen recognition, natural TCRs produce a highly organised immune synapse that can recognise an antigen at a very low density.77,78 However, the immune synapse created during antigen recognition by CARs is less organised than that by a natural TCR.
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These distinctions are likely to significantly affect the quality of responses induced in T cells expressing CARs. Fry
Overcoming resistance to CAR T-cell therapy
Improving CAR T-cell design
Selection of effector T cells
Effector T cells are the main processing plant for the biological activity of CARs, and play a crucial role in the anti-tumour effect and duration of action of CARs. Accurate detection and isolation of the most potential subpopulations of T cells before
Antigen density
Numerous studies have demonstrated that antigen density on tumour cells correlates with the efficacy and remission durability of CAR T cells in patients with leukaemia and lymphoma.13,15,82–85 A recent research demonstrated that upregulation of CD22 on the cell surface improved CAR T cell functionality and long-term persistence.
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Moreover, Bryostatin 1, a drug that is being administered safely to humans, can increase the expression of CD22 in leukaemia and lymphoma cell lines, resulting in longer duration of
Selection of co-stimulatory molecules
The co-stimulatory molecules in the intracellular signalling region of the CAR T cells play an important role in regulating T cell expansion, duration, and anti-tumour effects; however, the biological activities of individual costimulatory molecules are different. Common costimulatory molecules include CD28, 4-1BB, OX40, ICOS, and CD27, of which CD28 and 4-1BB can effectively promote the secretion of IL-2 and IFN-γ. Studies have shown that 4-1BB can effectively promote the expansion of memory T cells and reduce the depletion of persistent CAR T signals.
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Thus, CAR T cells incorporating a 4-1BB costimulatory molecule might lead to a reduced antigen-positive relapse. Hombach
Fully human CARs
Presently, clinical trials commonly use the CAR scFv segment of murine origin, which has high affinity and immunogenicity. CAR T cells with high affinity have poor ability to distinguish tumour cells with high levels of target antigen from normal cells with low expression. Furthermore, the human body will reject CARs with high immunogenicity, considering them foreign bodies. Reducing immunogenicity of CARs using fully human scFvs could improve the persistence of CAR T cells and their functions against tumour cells.88–90 Sommermeyer
Armoured CAR T cells
Armoured CAR T cells are modified to co-express cytokines and co-stimulatory molecules in order to enhance the anti-tumour immune response by converting a suppressive tumour microenvironment into a proinflammatory one.
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For example, CAR T cells armoured to secrete IL-12 enhance the cytotoxic activity of CD8+ T and NK cells and stimulate a Th1 helper T cell response.
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CD40L expressed in armoured CAR T cells increased the cytotoxicity of these cells
Universal CAR T cells
Universal CAR T cells are used in genome-editing technologies such as zinc finger nuclease, transcription activator-like effector nuclease (TALEN) and CRISPR-Cas9 to knock out TCR, human leukocyte antigen and other related signaling pathway genes on donor T cells,
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thereby reducing the risk of graft-
Multi-targeted CAR T cells
Strategies to overcome the relapse rate due to antigen loss following CAR T-cell therapy can be combined with the following approaches: (a) T-cell products that are separately transduced for different CARs can be infused together or sequentially; (b) use of a single vector that encodes two or three different CARs on a single T cell (bicistronic CAR); or (c) encode two CARs on the same chimeric protein using a single vector (tandem CAR) (Figure 3). Majzner

Targeting more than one antigen receptor approaches. (A) Coadministration-producing two separate CAR-T cell products and infusing together or sequentially. (B) Bicistronic CAR-using a single vector that encodes two or three different CARs on a single T cell. (C) Tandem CAR-encoding two CARs on same chimeric protein using a single vector.
Improvement of tumour immune microenvironment
Improving the tumour immune microenvironment can greatly improve the immune efficacy of CAR T cells and reduce the adverse events. However, due to the complexity of the tumour microenvironment and the diversity of regulatory mechanisms, clinical efficacy cannot be achieved by monotherapy. The main regulatory mechanisms of the immune microenvironment can be combined with the following comprehensive treatments.
Studies have proved that addition of an agent blocking the PD-1 immunosuppressive pathway (anti-PD-1) greatly improved the efficacy of CAR T cells by inhibition of the interaction between PD-1 and its ligands PD-L1/PD-L2.104,105
Similarly, chemotherapy and radiotherapy can improve immunosuppression by inducing apoptosis of or specifically removing regulatory T cells (Tregs). Moreover, eradication of Tregs can enhance the cell response and increase levels of CAR T cells. 106 One study found that chemotherapy based on low-dose cyclophosphamide could effectively eliminate Tregs and exert immunomodulatory effects. A combined immunotherapeutic approach has been reported to improve the prognosis. 107
The cytokines TGF-β and IL-10 are the major immunosuppressive factors, and downregulate the expression of TGF-β and IL-10 receptors on T cells by genetic engineering methods, to improve the efficacy of CAR T cells. In addition, activation factors such as IL-2, IL-12, and IL-15 can promote the immune function of effector T cells by creating a microenvironment that is conducive to the survival and efficacy of T cells, resulting in more effective anti-tumour effects by inducing the secretion of activating factors by CAR T cells.47,108,109
Combination therapy
Combining CAR T-cell therapy with other agents, such as Bruton tyrosine kinase inhibitors, may reduce recurrence after infusion and improve long-term survival. Fraietta
Conclusion
In conclusion, advancements in our understanding of the mechanisms of resistance to CAR T-cell therapy are leading to new insights regarding this treatment. Novel strategies are being developed to overcome the resistance and improve clinical outcomes in patients with relapsed and refractory haematological malignancies. Various treatment approaches, such as targeting more than one antigen receptor, armoured CAR T-cells, fully human CAR T cells, CAR NK-cell therapy, and combination therapies with other immunotherapeutic agents are being explored to overcome the issue of resistance. However, the effectiveness of the aforementioned treatments remains unclear. Thus, further research is needed to maximise the duration of responses while minimising the risk of relapse.
Footnotes
Conflict of interest statement
The authors declare that there is no conflict of interest.
Funding
The authors disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This study was supported by National natural Science Foundation of China (U1904139), Department of Science and Technology of Henan province (182102310114).
