Abstract
Purpose of research
Describe prescribing patterns in Australian Vietnam veterans, identify CYP2C19-metabolised medications using established pharmacogenetic (PGx) resources, characterise CYP2C19 profiles of veterans and assess the potential clinical impact of these medications.
Major findings
Among 283 veterans with CYP2C19 profiles, 256 reported current medications use, with a mean prescribed medication of 5.4. Of these, 89 veterans (34.7%) were prescribed at least one medication with CYP2C19 PGx recommendation. Notably, 52 veterans (58.4%) had CYP2C19 profiles that may be at risk of therapeutic failure or adverse effects. Prescribed medications also included six CYP2C19 inhibitors and one inducer, with potential to induce phenoconversion and impact drug metabolism.
Conclusion
Veterans experienced high levels of polypharmacy and frequently carried CYP2C19 phenotypes associated with increased risk of therapeutic failure or adverse effects. The presence of CYP2C19 inhibitors and inducers raises the potential for phenoconversion, where CYP2C19 profiles may be placed at risk. Given their similarities to the broader older population, these findings suggest that both groups may benefit from pre-emptive PGx testing. Furthermore, ongoing monitoring of drug–gene and drug–drug interactions remains essential to optimise medication safety and efficacy in these high-risk individuals.
Introduction
Australian Vietnam veterans are now an ageing population with a high burden of physical and mental health comorbidities. 1 These complexities make medication management challenging, increasing the risk of drug interactions, contraindications and adverse effects. 2 Multiple comorbidities often lead to polypharmacy (five or more medications) and psychotropic polypharmacy (two or more psychotropic drugs). 3 A systematic review and meta-analysis examining general and psychotropic polypharmacy in military and veteran populations found a high pooled prevalence of both – general polypharmacy was reported at 49% across five studies, and psychotropic polypharmacy at 36% across 15 studies. 4 For individuals with post-traumatic stress disorder (PTSD) selecting effective psychotropics is challenging, often involving prolonged trial and error and the use of multiple agents with limited efficacy.5,6 This approach can lead to poor health outcomes, underscoring the need for more personalised and efficient prescribing. 7
Pharmacogenetics (PGx) is gaining traction as a tool to guide drug selection and dosing. 8 The Royal College of Pathologists of Australasia (RCPA) highlighted in 2017 that many Australians were prescribed gene–drug-associated medications, with a significant proportion likely carrying variants warranting therapy adjustments. 9 In 2024, the RCPA released PGx testing guidelines for 35 common medications to improve efficacy and reduce adverse reactions in Australia (https://www.rcpa.edu.au/Library/Practising-Pathology/Pharmacogenomic-Indications-in-Australia). However, Medicare subsidised PGx tests remain limited. 10 Whilst PGx should not be used in isolation to guide treatment decisions, the general recommendation is to use this approach in conjunction with existing clinical data, including Therapeutic Drug Monitoring and knowledge of known drug–drug interactions. 11
CYP2C19 is a key enzyme in the metabolism of various medications. 12 While CYP2C19 activity is multifactorial, single nucleotide polymorphisms (SNPs) determine metabolic activity and thus medication response. 12 Individuals can be classified into ultra-rapid (UM, two gain-of-function), rapid (RM, one gain-of-function), normal (NM, two wildtype), intermediate (IM, one non-functional) and poor metabolisers (PM, two non-functional). 13
This study aims to (1) examine medication use in Australian Vietnam veterans, (2) identify CYP2C19-metabolised drugs using available PGx resources (former PharmGKB site now ClinPGx, Clinical Pharmacogenetics Implementation Consortium (CPIC), Dutch Pharmacogenetics Working Group (DPWG) and RCPA), (3) characterise PGx profiles of the veterans and determine the prevalence of CYP2C19-metabolised medication use and (4) assess the potential clinical impact for veterans prescribed these medications.
Materials and methods
Ethics
The study was approved by the relevant Human Research Ethics Committees.
Participants and genetic data
Data collection and evaluations undergone by veterans have been reported in a prior publication. 14 Briefly, the data was obtained from the PTSD Initiative study conducted at Gallipoli Medical Research, Brisbane, Australia, which occurred between 2014 and 2015. The study included male veterans who previously served in the Australian Defence forces during the Vietnam War. A total of 311 veterans consented, and their data was considered for subsequent evaluations.
Psychological and physical outcome measures
Summary of evaluations and conditions assessed.
Following quality control of genotype data obtained from blood samples, 28 veterans were removed due to missing genotypes, relativeness or genotyping error, leaving 283 individuals. As not all veterans reported current medications, results relating to medications were reported only on 256 individuals.
Medications
Detailed methodologies on the classification of current medications taken by participants have been described in a previous publication. 16 Briefly, current medications were recorded and coded using the Anatomical Therapeutic Chemical (ATC) classification system. Emphasis was placed on central nervous system (N class medications) drugs, excluding anaesthetics (N01). Lithium was considered an independent class (N05AN), and all benzodiazepines in hypnotic and sedative class (N05CD) were placed with anxiolytics (N05B) to capture within-class polypharmacy. Medications typically used for cardiovascular conditions but considered off-label for anxiety disorders were also considered. These medications included beta-blockers (C07A) and prazosin (C02CA01).
Medications lacking an ATC code were excluded. Where ATC codes differed but the active ingredient was the same (e.g. short-acting and long-acting insulin), these were treated as a single medication.
PGx recommendations on CYP2C19 were sourced from CPIC and DPWG in the former PharmGKB site now ClinPGx (https://www.clinpgx.org/), and the PGx indications in Australia developed by the RCPA (https://www.rcpa.edu.au/Library/Practising-Pathology/Pharmacogenomic-Indications-in-Australia).
Medications affected by CYP2C19 classified as either substrates (metabolised by CYP2C19), inhibitors (reduce CYP2C19 activity) or inducers (enhance CYP2C19 activity), along with their corresponding levels of evidence according to the Flockhart Table. 17
Genotyping
Handling of blood samples for genotyping was described in a previous publication. 18 Blood samples were collected from veterans and sent to the Australian Genome Research Facility (AGRF) which carried out DNA extraction and genotyping. Samples were stored in a −20°C environment. The MACHERY-NAGEL NucleoSpin L (MACHEREY-NAGEL GmbH & Co. KG, Dueren, NRW, Germany) was used to extract DNA from 2 mL of blood. DNA quality was evaluated using resolution on a 0.8% agarose gel at 130 V for a period of 60 min and normalised to 200 ng of DNA in 4 μL of water.
Samples were analysed on an Illumina PsychArray-24 BeadChip and scanned using the Illumina iScan systems. Subsequently, quality control was conducted using the GenomeStudio v2011.1 (Illumina, San Diego, CA, USA) with Genotyping Module 1.9.4 software using the InfiniumPsychArray-24v1-1_A1 systems which creates and clusters files for calling variants. Genotype call rate across variants was 99.59%.
Imputation
Not all genotypes were available, necessitating imputation of genetic variants to ensure PGx was properly classified. Prior to imputation, quality control was performed to remove variants with a minor allele frequency <1%, a call rate <95% and a Hardy–Weinberg equilibrium threshold <0.000001. Genotypes were imputed using the Sanger Imputation Server (https://imputation.sanger.ac.uk/). Chromosomes were phased against the UK10K + 1000 Genomes Phase 3 reference panel using EAGLE2 before imputation with the Positional Burrows Wheeler Transform. The Sanger server was used for its superior coverage of variants of interest. Imputed variants with an info score >0.6 were kept for further analysis, consistent with best practices to ensure accuracy and minimise phenotype misclassification.
PGx calling
Coding used to determine the CYP2C19 PGx for each participant.
Genotypes were coded 0, 1 or 2 based on the count of the allele of interest.
Descriptive analysis
Descriptive analyses were performed using R (v4.5.0) and Microsoft Excel.
Results
Demographics
Patient characteristics.
Psychological and clinical assessments
For 201 veterans with data available (Table 3), 102 (50.7%) met the DSM-5 criteria for trauma exposure and were diagnosed with PTSD, by both a psychiatrist and CAPS-5. The average CAPS-5 total symptom severity score was 9.7 (10.1).
On average, veterans experienced mild symptoms of depression, anxiety and stress with DASS-21 sub-scores of 4.4 (SD, 4.5), 3.9 (SD, 4.2) and 7.6 (SD, 5.2), respectively (Table 3). Among the 281 veterans with data available (Table 3), the number (%) of veterans with mild symptom severity or greater for depression, anxiety and stress were 108 (38.4%), 114 (40.6%) and 130 (46.3%), respectively.
When assessing alcohol use, cognitive function and daytime sleepiness, the average scores for AUDIT, MoCA and ESS were 7.32 (SD, 5.8), 26.3 (SD, 2.5) and 8.4 (SD, 4.8), respectively (Table 3). Among the 281 veterans with data available, most veterans had a low-risk AUDIT score (N = 170, 60.5%), with relatively fewer individuals at high risk (N = 17, 6.1%) or with possible alcohol dependence (N = 8, 2.9%).
Among the 280 veterans with information available, 30 veterans (10.7%) were found to be at risk of suicide. Fewer veterans experienced generalised anxiety disorder (N = 14, 5.0%) and major depression (N = 21, 7.5%), according to MINI. In terms of sleep disturbances for the 283 veterans with data available, more than half of the participants experienced nightmares (N = 169, 59.7%). Obstructive sleep apnoea was also reported by this cohort (N = 89, 31.4%). A notable proportion of participants (N = 282 with available data) reported regular pain (N = 136, 48.2%).
Polypharmacy for all participants
Among veterans reporting current medication use (N = 256), the average number of medications taken was 5.4 (SD, 3.5). A significant proportion of participants reported general polypharmacy (N = 134, 52.3%) (Table 3). Psychotropic medication use was common, with 46.9% of veterans (N = 120) reporting at least one such medication. Psychotropic polypharmacy was observed in 22.7% (N = 58).
Medications with established recommendations
A total of 267 medications were used by veterans in this study. Of these, acetylsalicylic acid (aspirin), a non-steroidal anti-inflammatory drug (NSAID), was the most commonly prescribed, taken by 87 of 256 participants (34.0%), followed by atorvastatin (N = 49, 19.1%) and paracetamol (N = 48, 18.8%). For drugs metabolised by CYP2C19, omeprazole was the most frequently prescribed, taken by 22 of 256 participants (8.5%), followed by clopidogrel (N = 20, 7.8%) and escitalopram (N = 16, 6.3%). Forty-seven medications (17.6%) were classified as psychotropics (N class drugs). Nine (3.4%) medications were metabolised by CYP2C19 based on CPIC and DPWG recommendations. Among the 47 psychotropic medications, five antidepressants – escitalopram, doxepin, sertraline, citalopram and amitriptyline – were metabolised by CYP2C19.
Number of participants using drugs with either a CYP2C19 according to CPIC/DPWG or RCPA PGx recommendation.
CYP2C19 PGx frequencies among participants
Observed and expected CYP2C19 phenotype distribution.
CYP2C19 medication interactions
Summary of medication frequency and CYP2C19 interaction potential.
Discussion
PGx can improve medication safety by guiding drug selection, but its use in Australia is limited. This study examined CYP2C19 variation and drug use in veterans.
Polypharmacy was prevalent among veterans, with over half taking multiple medications and more than one in five prescribed multiple psychotropics. While polypharmacy is common and often necessary in older adults, 20 it heightens the risk of drug–drug interactions, and adverse outcomes highlighting the need for PGx testing to minimising unnecessary polypharmacy.2,20
Genetic variations in CYP2C19 clinically important due to its role in drug metabolism, particularly for medications used in cardiovascular and mental health disorders. 12 As such, CYP2C19 is routinely included in PGx panels to identify drug–gene interactions and guide medication dosing. The high proportion of veterans (89/256, 34.7%) prescribed medications with CYP2C19 pharmacogenomic recommendations (CPIC/DPWG or RCPA) highlights the potential clinical utility of implementing PGx testing in this population. Notably, many veterans carry genotypes associated with altered metabolism (165/283, 58.3%), which may place them at increased risk of therapeutic failure or adverse effects when prescribed certain medications. In fact, a number of these individuals are already taking CYP2C19-metabolised medications (52/89, 58.4%), meaning they may currently be at risk. These findings suggest that routine consideration of CYP2C19 phenotype could inform safer, more effective prescribing.
Panel-based PGx testing and programs such as PREDICT (The Pharmacogenomic Resource for Enhanced Decisions in Care and Treatment) or the Mayo-Baylor Right 10K study have been developed to support implementation of PGx into clinical practice.21–23 These programs identify actionable drug–gene interactions and verify and incorporate this information into medical records. Through this pre-emptive approach, the Mayo-Baylor RIGHT 10K study found that most participants could benefit from the pre-emptive testing of 13/77 genes assessed, including CYP2C19. 22 A recent review affirmed the value of such testing in improving prescribing but cautioned that existing PGx guidelines are largely derived from Caucasian ancestry, limiting their applicability to diverse populations. 24
Notably, the average age of veterans is 68.8 years, which highlights the potential value of PGx testing in older adults. A study conducted in Denmark consisting of community-dwelling participants in a similar age group (65–98 years) found 37 out of 87 individuals taking multiple drugs with CYP2C19 recommendations according to CPIC and DPWG (42.5%), 25 further supporting the relevance of PGx testing in this age group.
While drug–gene interactions are important in prescribing, phenoconversion can alter genotype-predicted metabolism. Phenoconversion occurs when non-genetic factors, such as concomitant CYP inhibitors or inducers, modify actual drug metabolism, making polypharmacy a key risk factor. CYP2C19 NM may phenoconvert to PM or UM phenotypes with concurrent inhibitors or inducers, respectively. 26 For instance, the concomitant use of omeprazole and clopidogrel in three veterans in our study may place them at risk of adverse cardiovascular outcomes due to these interactions. 27 The use of omeprazole can convert an NM into PM, reducing clopidogrel’s antiplatelet effect and may increase risk of cardiovascular events. 27 Drugs metabolised by CYP enzymes to varying extents and active metabolites – as well as lifestyle and other factors – can compound this complexity by contributing to drug–drug interaction risk. 28
Strengths and limitations
The study has several strengths, including its focus on a homogenous group of Australian Vietnam veterans which provides valuable insights into a population often underrepresented in research. The use of PGx guidelines enhanced the interpretation of dosing recommendations, while the availability of comprehensive data, including psychological and physical health measures, medication use and PGx profiles, enabled a nuanced and multi-dimensional analysis. This study was particularly relevant for older veterans who are at increased risk of polypharmacy and its associated complications.
Despite these strengths, several limitations should be acknowledged. Although the homogeneous cohort allowed for a tighter genetic analysis, the sample size was small and may not represent all veterans. Since all participants are male, the clinical implications of these variants may be limited, given known sex differences in pharmacokinetics, drug response and prescribing patterns. As such, inclusion of female veterans in future studies will be important. Other factors – such as comorbidities, concurrent medications and lifestyle behaviours not captured in this study – can influence drug metabolism and remain clinically important. Another limitation is the lack of ethnic diversity with most participants being from European ancestry. Genetic variability in CYP2C19 differs substantially across ethnic or ancestral groups, potentially affecting drug metabolism and response. As such, PGx findings in a predominantly European population may not apply to genetically diverse groups, such as those of Asian or African descent. 29 Finally, this study focused on CYP2C19 due to data completeness and its relevance to commonly prescribed medications in this cohort. Other genes affecting drug metabolism, such as CYP2D6 and CYP3A4, are also important in the context of polypharmacy and represent priorities for future research.
Conclusion
This study suggests that PGx may benefit Australian veterans and the broader elderly population, given the prevalence of polypharmacy and CYP2C19-affected medications. Future research should expand to younger and more diverse veterans, include additional pharmacogenes and incorporate longitudinal outcomes to assess the real-world impact of PGx-guided therapy on effectiveness, polypharmacy and healthcare costs. Clinical pathways for PGx testing in veterans should be informed by international models, such as the US Veterans PHASER program and large-scale civilian initiatives, including PREDICT and Mayo Right 10K, which provide valuable frameworks for integrating pharmacogenomics into routine care. 23
Footnotes
Acknowledgements
Sullivan Nicolaides Pathology and Queensland X-Ray provided in-kind support, and the Australian Government Department of Veterans’ Affairs provided transport for eligible participants. We also gratefully acknowledge the dedicated efforts of the participants and their families, and the clinical and support staff involved in data collection.
Declaration of conflicting interests
The authors received no financial support for the research, authorship, and/or publication of this article.
Funding
The authors disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: The original study from which this data was obtained (the PTSD Initiative at the Gallipoli Medical Research Institute) was funded by the Queensland Branch of the Returned and Services League of Australia (RSL).
Ethical considerations
The study was approved by the Departments of Defence and Veteran Affairs Human Research Ethics Committee (EO14-002) and the Queensland University of Technology Human Research Ethics Committee (LR 2024-6457-20350).
Consent to participate
Written informed consent was obtained from participants in advance.
Data Availability Statement
The de-identified data we analysed are not publicly available, but requests to the corresponding author for the data will be considered on a case-by-case basis.
