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Research article

First published 2026-1

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification

Nathaniel K. Brown, Vikram S. Shivakumar, Ben Langmead

Journal of Computational Biology

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Research article

First published 2023-11

Gap-Sensitive Colinear Chaining Algorithms for Acyclic Pangenome Graphs

Ghanshyam Chandra, Chirag Jain

Journal of Computational Biology

Open access

Research article

First published 2026

Pangenomics-Driven Reverse Vaccinology for the Discovery of New Vaccine Candidates Against Bordetella pertussis

Majid Abdelouahab, Diawara Idrissa

Bioinformatics and Biology Insights

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Research article

First published 2023-07

Genomic Insights into Pangenome and Antimicrobial Resistance in Campylobacter spp. Isolated from Chickens at Specific Growth Stages

Xiaoqi Zang, Hongyue Lv, Pingyu Huang [...]

Foodborne Pathogens and Disease

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Research article

First published 2022-02

MONI: A Pangenomic Index for Finding Maximal Exact Matches

Massimiliano Rossi, Marco Oliva, Ben Langmead [...]

Journal of Computational Biology

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Research article

First published 2026-1

Elucidating Transitions of k -mer-Based Objects Across k -mer Sizes

Adam Park, David Koslicki

Journal of Computational Biology

Open access

Research article

First published 2010-06

Gene Expression Profiling of Breast Cancer Cell Lines in Response to Soy Isoflavones Using a Pangenomic Microarray Approach

Samir Satih, Nasséra Chalabi, Nadège Rabiau [...]

OMICS: A Journal of Integrative Biology

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Research article

First published 2025-11

Genomic Comparison of Reoccurring,Emerging,and Persistent (REP) Shiga Toxin-Producing Escherichia coli O157:H7

Yishan Yang, Xianghe Yan, Bradd J. Haley [...]

Foodborne Pathogens and Disease

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Research article

First published 2018-07

Dynamic Alignment-Free and Reference-Free Read Compression

Guillaume Holley, Roland Wittler, Jens Stoye [...]

Journal of Computational Biology

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Research article

First published 2023-06

Emerging Pathogens in Planetary Health and Lessons from Comparative Genome Analyses of Three Clostridia Species

Ankit Singh Tanwar, Padival Shruptha, Apoorva Jnana [...]

OMICS: A Journal of Integrative Biology

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