Background: Evidence supports that motor competence is inversely associated with weight status, yet less is known about this relationship among young people who are underweight. We hypothesized that there is a non-linear trajectory of motor competence across weight status categories (from underweight to obesity). Purpose: To check whether a non-liner relationship exists between motor competence and weight status in adolescents. Research Design: Cross-sectional study. Study sample: we assessed the motor competence of 310 participants (44.8% boys), aged 12–15 years. Data Collection: Motor competence was assessed the Korperkoordinationstest für Kinder (KTK). Weight status (underweight, normal weight, overweight and obesity) was determined using body mass index (BMI). Results: Motor competence was inversely associated with BMI in normal weight (rho = −.222, p = .001), overweight (rho = −.309, p = .028) and obesity (rho = −.663, p < .001), but not in underweight (rho = .193, p = .508). Adolescents with normal weight presented higher motor competence than those with overweight (mean difference = 17.198, p = .001) and obesity (mean difference = 31.686, p < .001). There was no significant difference in motor competence between normal weight and underweight categories. In addition, boys showed a curvilinear trajectory of motor competence, being ascendant from underweight to normal weight and then downward with increasing BMI. Polynomial regressions, fitting a non-linear model, confirmed a non-linear relationship between motor competence and BMI in boys (B = −3.534, p < .001). Conclusions: Our findings suggest that the inverse relationship between motor competence and BMI does not occur in adolescents who are underweight. Furthermore, our results supported the non-linear hypothesis about the relationship between motor competence and weight status in boys.