PakarinenMPRintalaRJ. Surgery of biliary atresia. Scand J Surg. 2011;100:49-53.
4.
BalistreriWFGrandRHoofnagleJH. Biliary atresia: current concepts and research directions. Summary of a symposium. Hepatology. 1996;23:1682-1692.
5.
BezerraJA. The next challenge in pediatric cholestasis: deciphering the pathogenesis of biliary atresia. J Pediatr Gastroenterol Nutr. 2006;43(suppl 1):S23-S29.
6.
DesmetVJ. Congenital diseases of intrahepatic bile ducts: variations on the theme “ductal plate malformation”. Hepatology. 1992;16:1069-1083.
7.
TanCEDriverMHowardERMoscosoGJ. Extrahepatic biliary atresia: a first-trimester event? Clues from light microscopy and immunohistochemistry. J Pediatr Surg. 1994;29:808-814.
8.
MoreckiRGlaserJHChoSBalistreriWFHorwitzMS. Biliary atresia and reovirus type 3 infection. N Engl J Med. 1982;307:481-484.
9.
Riepenhoff-TaltyMGouveaVEvansMJ. Detection of group C rotavirus in infants with extrahepatic biliary atresia. J Infect Dis. 1996;174:8-15.
10.
JevonGPDimmickJE. Biliary atresia and cytomegalovirus infection: a DNA study. Pediatr Dev Pathol. 1999;2:11-14.
11.
SokolRJMackC. Etiopathogenesis of biliary atresia. Semin Liver Dis. 2001;21:517-524.
12.
MackCL. The pathogenesis of biliary atresia: evidence for a virus-induced autoimmune disease. Semin Liver Dis. 2007;27:233-242.
13.
LandingBH. Considerations of the pathogenesis of neonatal hepatitis, biliary atresia and choledochal cyst—the concept of infantile obstructive cholangiopathy. Prog Pediatr Surg. 1974;6:113-139.
14.
al-MasriANWerfelTJakschiesDvon WussowP. Intracellular staining of Mx proteins in cells from peripheral blood, bone marrow and skin. Mol Pathol. 1997;50:9-14.
15.
HuangYHChouMHDuYY. Expression of toll-like receptors and type 1 interferon specific protein MxA in biliary atresia. Lab Invest, 2007;87:66-74.
16.
RauschenfelsSKrassmannMAl-MasriAN. Incidence of hepatotropic viruses in biliary atresia. Eur J Pediatr. 2009;168:469-476.
17.
Domiati-SaadRDawsonDBMargrafLRFinegoldMJWeinbergAGRogersBB. Cytomegalovirus and human herpesvirus 6, but not human papillomavirus, are present in neonatal giant cell hepatitis and extrahepatic biliary atresia. Pediatr Dev Pathol. 2000;3:367-373.
18.
DrutRDrutRMGomezMACueto RúaELojoMM. Presence of human papillomavirus in extrahepatic biliary atresia. J Pediatr Gastroenterol Nutr. 1998;27:530-535.
19.
MahjoubFShahsiahRArdalanFA. Detection of Epstein Barr virus by chromogenic in situ hybridization in cases of extra-hepatic biliary atresia. Diagn Pathol. 2008;3:19.
20.
FischlerBEhrnstAForsgrenMOrvellCNemethA. The viral association of neonatal cholestasis in Sweden: a possible link between cytomegalovirus infection and extrahepatic biliary atresia. J Pediatr Gastroenterol Nutr. 1998;27:57-64.
21.
TylerKLSokolRJOberhausSM. Detection of reovirus RNA in hepatobiliary tissues from patients with extrahepatic biliary atresia and choledochal cysts. Hepatology. 1998;27:1475-1482.
22.
StanleyNFDormanDCPonsfordJ1953Studies on the pathogenesis of a hitherto undescribed virus (hepato-encephalomyelitis) producing unusual symptoms in suckling mice. Aust J Exp Biol Med Sci. 1953;31:147-159.
23.
PapadimitriouJM. The biliary tract in acute murine reovirus 3 infection. Light and electron microscopic study. Am J Pathol. 1968;52:595-611.
24.
BangaruBMoreckiRGlaserJHGartnerLMHorwitzMS. Comparative studies of biliary atresia in the human newborn and reovirus-induced cholangitis in weanling mice. Lab Invest. 1980;43:456-462.
25.
BartonESYoureeBEEbertDH. Utilization of sialic acid as a coreceptor is required for reovirus-induced biliary disease. J Clin Invest. 2003;111:1823-1833.
26.
WilsonGAMorrisonLAFieldsBN. Association of the reovirus S1 gene with serotype 3-induced biliary atresia in mice. J Virol. 1994;68:6458-6465.
27.
HaradaKSatoYItatsuK. Innate immune response to double-stranded RNA in biliary epithelial cells is associated with the pathogenesis of biliary atresia. Hepatology. 2007;46:1146-1154.
28.
NakashimaTHayashiTTomoedaSYoshinoMMizunoT. Reovirus type-2-triggered autoimmune cholangitis in extrahepatic bile ducts of weanling DBA/1J mice. Pediatr Res. 2014;75:29-37.
29.
GlaserJHBalistreriWFMoreckiR. Role of reovirus type 3 in persistent infantile cholestasis. J Pediatr. 105:912-915.
30.
RichardsonSCBishopRFSmithAL. Reovirus serotype 3 infection in infants with extrahepatic biliary atresia or neonatal hepatitis. J Gastroenterol Hepatol. 1994;9:264-268.
31.
DussaixEHadchouelMTardieuMAlagilleD. Biliary atresia and reovirus type 3 infection. N Engl J Med. 1984;310:658.
32.
BrownWRSokolRJLevinMJ. Lack of correlation between infection with reovirus 3 and extrahepatic biliary atresia or neonatal hepatitis. J Pediatr. 1988;113:670-676.
33.
SaitoTShinozakiKMatsunagaT. Lack of evidence for reovirus infection in tissues from patients with biliary atresia and congenital dilatation of the bile duct. J Hepatol. 2004;40:203-211.
34.
SteeleMIMarshallCMLloydRERandolphVE. Reovirus 3 not detected by reverse transcriptase-mediated polymerase chain reaction analysis of preserved tissue from infants with cholestatic liver disease. Hepatology. 1995;21:697-702.
35.
GreenbergHBEstesMK. Rotaviruses: from pathogenesis to vaccination. Gastroenterology. 2009;136:1939-1951.
36.
Riepenhoff-TaltyMSchaekelKClarkHF. Group A rotaviruses produce extrahepatic biliary obstruction in orally inoculated newborn mice. Pediatr Res. 1993;33(4 pt 1):394-399.
37.
MackCLTuckerRMSokolRJKotzinBL. Armed CD4+ Th1 effector cells and activated macrophages participate in bile duct injury in murine biliary atresia. Clin Immunol. 2005;115:200-209.
38.
HertelPMCrawfordSEFinegoldMJEstesMK. Osteopontin upregulation in rotavirus-induced murine biliary atresia requires replicating virus but is not necessary for development of biliary atresia. Virology. 2011;417:281-292.
39.
PetersenCKuskeMBrunsEBiermannsDWussowPVMildenbergerH1998 Progress in developing animal models for biliary atresia. Eur J Pediatr Surg. 1998;8:137-141.
40.
AllenSRJafriMDonnellyB. Effect of rotavirus strain on the murine model of biliary atresia. J Virol. 2007;81:1671-1679.
41.
WangWDonnellyBBondocA. The rhesus rotavirus gene encoding VP4 is a major determinant in the pathogenesis of biliary atresia in newborn mice. J Virol. 2011;85:9069-9077.
42.
FengNSenAWolfMVoPHoshinoYGreenbergHB. Roles of VP4 and NSP1 in determining the distinctive replication capacities of simian rotavirus RRV and bovine rotavirus UK in the mouse biliary tract. J Virol, 2011:85:2686-2694.
43.
BakerMPrasadBV. Rotavirus cell entry. Curr Top Microbiol Immunol, 2010;343:121-148.
44.
FlemingFEGrahamKLTakadaYCoulsonBS. Determinants of the specificity of rotavirus interactions with the α2β1 integrin. J Biol Chem. 2011;286:6165-6174.
45.
JafriMDonnellyBAllenS. Cholangiocyte expression of α2β1-integrin confers susceptibility to rotavirus-induced experimental biliary atresia. Am J Physiol Gastrointest Liver Physiol. 2008;295:G16-G26.
46.
Czech-SchmidtGVerhagenWSzavayPLeonhardtJPetersenC. Immunological gap in the infectious animal model for biliary atresia. J Surg Res. 2001;101:62-67.
47.
MohantySKDonnellyBBondocA. Rotavirus replication in the cholangiocyte mediates the temporal dependence of murine biliary atresia. PLoS One. 2013;8(7):e69069.
48.
BoboLOjehCChiuDMachadoAColombaniPSchwarzK. Lack of evidence for rotavirus by polymerase chain reaction/enzyme immunoassay of hepatobiliary samples from children with biliary atresia. Pediatr Res. 1997;41:229-234.
49.
MarteliusTKrogerusLHöckerstedtKBruggemanCLautenschlagerI. Cytomegalovirus infection is associated with increased inflammation and severe bile duct damage in rat liver allografts. Hepatology, 1998;27:996-1002.
50.
EvansPCColemanNWreghittTGWightDGAlexanderGJ. Cytomegalovirus infection of bile duct epithelial cells, hepatic artery and portal venous endothelium in relation to chronic rejection of liver grafts. J Hepatol. 1999;31:913-920.
51.
KoHMKimKSParkJW. Congenital cytomegalovirus infection: three autopsy case reports. J Korean Med Sci. 2000;15:337-342.
52.
ChangMHHuangHHHuangESKaoCLHsuHYLeeCY. Polymerase chain reaction to detect human cytomegalovirus in livers of infants with neonatal hepatitis. Gastroenterology. 1992;103:1022-1025.
DimmickJE. Intrahepatic bile duct paucity and cytomegalovirus infection. Pediatr Pathol. 1993;13:847-852.
55.
XuYYuJZhangR. The perinatal infection of cytomegalovirus is an important etiology for biliary atresia in China. Clin Pediatr (Phila). 2012;51:109-113.
56.
FischlerBWoxeniusSNemethAPapadogiannakisN. Immunoglobulin deposits in liver tissue from infants with biliary atresia and the correlation to cytomegalovirus infection. J Pediatr Surg. 2005;40:541-546.
57.
BrindleySMLanhamAMKarrerFMTuckerRMFontenotAPMackCL. Cytomegalovirus-specific T-cell reactivity in biliary atresia at the time of diagnosis is associated with deficits in regulatory T cells. Hepatology. 2012;55:1130-1138.
58.
ShenCZhengSWangWXiaoXM. Relationship between prognosis of biliary atresia and infection of cytomegalovirus. World J Pediatr. 2008;4:123-126.
59.
FischlerBSvenssonJFNemethA. Early cytomegalovirus infection and the long-term outcome of biliary atresia. Acta Paediatr. 2009;98:1600-1602.
60.
HadchouelMHugonRNOdievreM. Immunoglobulin deposits in the biliary remnants of extrahepatic biliary atresia: a study by immunoperoxidase staining in 128 infants. Histopathology. 1981;5:217-221.
61.
MackCLTuckerRMLuBR. Cellular and humoral autoimmunity directed at bile duct epithelia in murine biliary atresia. Hepatology. 2006;44:1231-1239.
62.
LuBRBrindleySMTuckerRMLambertCLMackCL. α-Enolase autoantibodies cross-reactive to viral proteins in a mouse model of biliary atresia. Gastroenterology. 2010:139:1753-1761.
63.
Abstracts of the American Association for the Study of Liver Diseases 62nd Annual Meeting. November 4-8, 2011. San Francisco, CA. Hepatology. 2011;54(suppl):360A-1513A.
64.
MohantySKIvantesCAMouryaRPachecoCBezerraJA. Macrophages are targeted by rotavirus in experimental biliary atresia and induce neutrophil chemotaxis by Mip2/Cxcl2. Pediatr Res. 2010;67:345-351.
65.
SaxenaVShivakumarPSablaGMouryaRChougnetCBezerraJA. Dendritic cells regulate natural killer cell activation and epithelial injury in experimental biliary atresia. Sci Transl Med. 2011;3:102ra194.
66.
BarnesBHTuckerRMWehrmannFMackDGUenoYMackCL. Cholangiocytes as immune modulators in rotavirus-induced murine biliary atresia. Liver Int. 2009;29:1253-1261.
67.
JafriMDonnellyBBondocAAllenSTiaoG2009Cholangiocyte secretion of chemokines in experimental biliary atresia. J Pediatr Surg. 2009;44:500-507.
68.
TuckerRMHendricksonRJMukaidaNGillRGMackCL. Progressive biliary destruction is independent of a functional tumor necrosis factor-α pathway in a rhesus rotavirus-induced murine model of biliary atresia. Viral Immunol. 2007;20:34-43.
69.
LeonhardtJKueblerJFTurowskiCTschernigTGeffersRPetersenC. Susceptibility to experimental biliary atresia linked to different hepatic gene expression profiles in two mouse strains. Hepatol Res. 2010;40:196-203.
70.
LeonhardtJStanullaMvon WasielewskiR. Gene expression profile of the infective murine model for biliary atresia. Pediatr Surg Int. 2006;22:84-89.
71.
MohantySKShivakumarPSablaGBezerraJA. Loss of interleukin-12 modifies the pro-inflammatory response but does not prevent duct obstruction in experimental biliary atresia. BMC Gastroenterol. 2006;6:14.
72.
KueblerJFCzech-SchmidtGLeonhardtJUreBMPetersenC. Type-I but not type-II interferon receptor knockout mice are susceptible to biliary atresia. Pediatr Res. 2006;59:790-794.
73.
WehrmannFKueblerJFWieneckeSAl-MasriANPetersenCLeonhardtJ. Functional Mx protein does not prevent experimental biliary atresia in Balb/c mice. Eur J Pediatr Surg. 2008;18:318-321.
74.
ShivakumarPCampbellKMSablaGE. Obstruction of extrahepatic bile ducts by lymphocytes is regulated by IFN-gamma in experimental biliary atresia. J Clin Invest. 2004;114:322-329.
75.
EricksonNMohantySKShivakumarPSablaGChakrabortyRBezerraJA2008 Temporal-spatial activation of apoptosis and epithelial injury in murine experimental biliary atresia. Hepatology. 2008;47:1567-1577.
76.
ShivakumarPSablaGMohantyS. Effector role of neonatal hepatic CD8+ lymphocytes in epithelial injury and autoimmunity in experimental biliary atresia. Gastroenterology. 2007;133:268-277.
77.
MackCLSokolRJ. Unraveling the pathogenesis and etiology of biliary atresia. Pediatr Res. 2005;57(5 pt 2):87R-94R.
78.
LiJBesshoKShivakumarP. Th2 signals induce epithelial injury in mice and are compatible with the biliary atresia phenotype. J Clin Invest. 2011;121:4244-4256.
79.
YangYLiuYJTangST. Elevated Th17 cells accompanied by decreased regulatory T cells and cytokine environment in infants with biliary atresia. Pediatr Surg Int. 2013;29:1249-1260.
80.
IakovenkoEPGrigor’evPIakovenkoAV. Effects of probiotic bifiform on efficacy of Helicobacter pylori infection treatment [in Russian]. Ter Arkh. 2006;78:21-26.
81.
GrindebackeHStenstadHQuiding-JarbrinkM. Dynamic development of homing receptor expression and memory cell differentiation of infant CD4+CD25high regulatory T cells. J Immunol. 2009;183:4360-4370.
82.
ShivakumarPSablaGEWhitingtonPChougnetCABezerraJA. Neonatal NK cells target the mouse duct epithelium via Nkg2d and drive tissue-specific injury in experimental biliary atresia. J Clin Invest. 2009;119:2281-2290.
83.
MiethkeAGSaxenaVShivakumarPSablaGESimmonsJChougnetCA. Post-natal paucity of regulatory T cells and control of NK cell activation in experimental biliary atresia. J Hepatol. 2010;52:718-726.
84.
LagesCSSimmonsJChougnetCAMiethkeAG. Regulatory T cells control the CD8 adaptive immune response at the time of ductal obstruction in experimental biliary atresia. Hepatology. 2012;56:219-227.
85.
O’HaraSPMottJLSplinterPLGoresGJLaRussoNF. MicroRNAs: key modulators of posttranscriptional gene expression. Gastroenterology. 2009;136:17-25.
86.
BesshoKShanmukhappaKSheridanR. Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia. BMC Syst Biol. 2013;7:104.
87.
HandNJHornerAMMasterZR. MicroRNA profiling identifies miR-29 as a regulator of disease-associated pathways in experimental biliary atresia. J Pediatr Gastroenterol Nutr. 2012;54:186-192.
88.
MatthewsRPEauclaireSFMugnierM. DNA hypomethylation causes bile duct defects in zebrafish and is a distinguishing feature of infantile biliary atresia. Hepatology. 2011;53:905-914.
89.
KawahigashiYMishimaTMizuguchiY. MicroRNA profiling of human intrahepatic cholangiocarcinoma cell lines reveals biliary epithelial cell-specific microRNAs. J Nippon Med Sch. 2009;76:188-197.
90.
OgawaTIizukaMSekiyaYYoshizatoKIkedaKKawadaN. Suppression of type I collagen production by microRNA-29b in cultured human stellate cells. Biochem Biophys Res Commun. 2010;391:316-321.
91.
RoderburgCUrbanGWBettermannK. Micro-RNA profiling reveals a role for miR-29 in human and murine liver fibrosis. Hepatology. 2011;53:209-218.
92.
ZahmAMHandNJBoatengLAFriedmanJR. Circulating microRNA is a biomarker of biliary atresia. J Pediatr Gastroenterol Nutr. 2012;55:366-369.
93.
ReikWWalterJ. Genomic imprinting: parental influence on the genome. Nat Rev Genet. 2001;2:21-32.
94.
GeimanTMRobertsonKD. Chromatin remodeling, histone modifications, and DNA methylation-how does it all fit together?J Cell Biochem. 2002;87:117-125.
95.
ChowJHeardE. X inactivation and the complexities of silencing a sex chromosome. Curr Opin Cell Biol. 2009;21:359-366.
96.
KloseRJBirdAP. Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci. 2006;31:89-97.
97.
ZhangDYSablaGShivakumarP. Coordinate expression of regulatory genes differentiates embryonic and perinatal forms of biliary atresia. Hepatology. 2004;39:954-962.
98.
ZhouYLuQ. DNA methylation in T cells from idiopathic lupus and drug-induced lupus patients. Autoimmun Rev. 2008;7:376-383.
99.
BaranziniSEMudgeJvan VelkinburghJC. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature. 2010;464:1351-1356.
100.
NakanoKWhitakerJWBoyleDLWangWFiresteinGS. DNA methylome signature in rheumatoid arthritis. Ann Rheum Dis. 2013;72:110-117.
101.
DongRZhaoRZhengSZhengYXiongSChuY. Abnormal DNA methylation of ITGAL (CD11a) in CD4+ T cells from infants with biliary atresia. Biochem Biophys Res Commun. 2012;417:986-990.