BainAlexander.1874. “Review of ‘Darwin on Expression’: Being a Postscript to The Senses and the Intellect . ” In The Senses and the Intellect , 697–714. 3rd ed. New York: Appleton.
2.
BaldwinJames Mark.1986. “A New Factor in Evolution. ” American Naturalist 30: 441–451. 536–53.
3.
BedauMark A., and HumphreysPaul, eds. 2008. Emergence: Contemporary Readings in Philosophy and Science . Cambridge: MIT Press.
BowlerPeter J.2003. Evolution: The History of an Idea . 3rd ed. Berkeley: University of California Press.
6.
BraunErez, and DavidLior. 2011. “The Role of Cellular Plasticity in the Evolution of Regulatory Novelty. ” In Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by GissisSnait B. and JablonkaEva, 181–192. Cambridge: MIT Press.
7.
BrosiusJ.1999. “RNAs From All Categories Generate Retrosequences That May Be Exapted As Novel Genes Or Regulatory Elements. ” Gene 238 (1): 115–134.
8.
BurkhardtRichard W.Jr.1995. The Spirit of System: Lamarck and Evolutionary Biology . New ed. Cambridge: Harvard University Press.
9.
CanguilhemGeorges.1965. La connaissance de la vie . 2nd ed. Paris: J. Vrin.
10.
ChomskyNoam.1988. Language and the Problems of Knowledge: The Managua Lectures . Cambridge: MIT Press.
11.
ChomskyNoam.2009. Cartesian Linguistics: A Chapter in the History of Rationalist Thought . 3rd ed. Cambridge: Cambridge University Press.
12.
ClaytonPhilip, and DaviesPaul, eds. 2006. The Re-Emergence of Emergence: The Emergentist Hypothesis from Science to Religion . Oxford: Oxford University Press.
13.
CorradiniAntonella, and O'ConnorTimothy, eds. 2010. Emergence in Science and Philosophy . New York: Routledge.
14.
CuvierGeorges.1935. “Eloge de M. de Lamarck, lu a l'Académie des sciences, le 26 novembre 1832. ” Mémoires de l'Académie Royale des Sciences de l'Institut de France 8: i–xxxi.
15.
DarwinCharles.1871. The Descent of Man and Selection in Relation to Sex . 2nd ed. 2 vols. London: J. Murray.
16.
DarwinCharles.1875. The Variation of Animals and Plants under Domestication . 2nd ed. 2 vols. London: John Murray.
17.
DarwinCharles.1876. On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life . 6th ed. London: John Murray.
18.
DawkinsRichard.1989. The Extended Phenotype: The Long Reach of the Gene . Oxford: Oxford University Press.
19.
DawkinsRichard.2006. The Selfish Gene. 1976 . 30th anniversary ed. Oxford: Oxford University Press.
20.
DayTroy, and BondurianskyRussell. 2011. “A Unified Approach to the Evolutionary Consequences of Genetic and Nongenetic Inheritance. ” American Naturalist 178 (2): E18–E36.
21.
DennettDaniel C.1995. Darwin's Dangerous Idea: Evolution and the Meanings of Life . New York: Simon & Schuster.
22.
DennettDaniel C.2003. “The Baldwin Effect: A Crane, Not a Skyhook. ” In Evolution and Learning: The Baldwin Effect Reconsidered , edited by WeberBruce H. and DepewDavid J., 69–106. Cambridge: MIT Press.
23.
DepewDavid J.2003. “Baldwin and His Many Effects. ” In Evolution and Learning: The Baldwin Effect Reconsidered , edited by WeberBruce H. and DepewDavid J., 3–31. Cambridge: MIT Press.
24.
EldredgeNiles.1995. Reinventing Darwin: The Great Debate at the High Table of Evolutionary Theory . New York: Wiley.
25.
FeltzBernard, CrommelinckMarc, and GoujonPhilippe, eds. 2006. Self-Organization and Emergence in Life Sciences . Dordrecht: Springer.
26.
FrancisRichard C.2011. Epigenetics: The Ultimate Mystery of Inheritance . New York: W.W. Norton.
27.
GayonJean.2006. “Hérédité des caractères acquis. ” In Lamarck, philosophe de la nature , edited by CorsiPietro, GayonJean, GohauGabriel, and TirardStéphane, 105–164. Paris: Presses universitaires de France.
28.
GeisonGerald.1995. The Private Science of Louis Pasteur . Princeton, NJ: Princeton University Press.
GissisSnait B., and JablonkaEva, eds. 2011. Transformations of Lamarckism: From Subtle Fluids to Molecular Biology . Cambridge: MIT Press.
31.
Godfrey-SmithPeter.2009. Darwinian Populations and Natural Selection . Oxford: Oxford University Press.
32.
GoldsteinJeffrey.1999. “Emergence as a Construct: History and Issues. ” Emergence: Complexity and Organization 1 (1): 49–72.
33.
GoodwinBrian.2001. How the Leopard Changed Its Spots: The Evolution of Complexity . Princeton, NJ: Princeton University Press.
34.
GorczynskiReginald M., and SteeleEdward J.. 1980. “Inheritance of Acquired Immunological Tolerance to Foreign Histocompatibility Antigens in Mice. ” Proceedings of the National Academy of Sciences 77: 2871–2875.
35.
GorelickRoot, LaublicherManfred, and MassicotteRachel. 2011. “Asexuality and Epigenetic Variation. ” In Epigenetics: Linking Genotype and Phenotype in Development and Evolution , 87–102. Berkeley: University of California Press.
36.
GouldStephen Jay.1997a. “Darwinian Fundamentalism. ” New York Review of Books , 34–37, June 12.
37.
GouldStephen Jay.1997b. “The Pleasures of Pluralism. ” New York Review of Books , 47–52, June 26.
38.
GouldStephen Jay, and LewontinRichard C.. 1979. “The Spandrels of San Marcos and the Panglossian Paradigm: A Critique of the Adaptationist Programme. ” Proceedings of the Royal Society of London, Series B 205 (1161): 581–598.
39.
GrunauChristoph.2011. “Methylation Mapping in Humans. ” In Epigenetics: Linking Genotype and Phenotype in Development and Evolution , 70–86. Berkeley: University of California Press.
40.
HaigDavid.1997. “The Social Gene. ” In Behavioural Ecology: An Evolutionary Approach , 4th ed., edited by KrebsJohn R. and DaviesNicholas B., 284–304. Oxford: Blackwell.
41.
HaigDavid.1999. “What is a Marmoset?
” American Journal of Primatology 49: 285–296.
42.
HaldaneJ. B. S.1990. The Causes of Evolution. 1932 . New ed. Princeton: Princeton University Press.
43.
HallgrimssonBenedikt, and HallBrian K., eds. 2011. Epigenetics: Linking Genotype and Phenotype in Development and Evolution . Berkeley: University of California Press.
44.
HuxleyJulian.2010. Evolution: The Modern Synthesis. 1942 . New ed. Cambridge: MIT Press.
45.
JablonkaEva, and LambMarion J.. 2005. Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life . Cambridge: MIT Press.
46.
JablonkaEva, and LambMarion J.. 2007. “The Expanded Evolutionary Synthesis – A Response to Godfrey-Smith, Haig, and West-Eberhard. ” Biology and Philosophy 22: 453–472.
47.
JablonkaEva, and RazGal. 2009. “Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications For the Study of Heredity and Evolution. ” Quarterly Review of Biology 84 (2): 131–176.
48.
KauffmanStuart A.1993. The Origins of Order: Self-Organization and Selection in Evolution . New York: Oxford University Press.
49.
KauffmanStuart A.2006. “On Emergence, Agency and Organization. ” Biology and Philosophy 21: 501–521.
50.
KellerEvelyn Fox.1983. A Feeling for the Organism: The Life and Work of Barbara McClintock . San Francisco, CA: W.H. Freeman.
51.
KellerEvelyn Fox.2002a. Making Sense of Life: Explaining Biological Development with Models, Metaphors, and Machines . Cambridge: Harvard University Press.
52.
KellerEvelyn Fox.2002b. The Century of the Gene . Cambridge: Harvard University Press.
53.
KellerEvelyn Fox.2008. “Organisms, Machines, and Thunderstorms: A History of Self-Organization, Part One. ” Historical Studies in the Natural Sciences 38 (1): 45–75.
54.
KellerEvelyn Fox.2009. “Organisms, Machines, and Thunderstorms: A History of Self-Organization, Part One. ” Historical Studies in the Natural Sciences 39 (1): 1–31.
55.
KellerEvelyn Fox.2011. “Self-Organization, Self-Assembly, and the Inherent Activity of Matter. ” In Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by GissisSnait B. and JablonkaEva, 357–364. Cambridge: MIT Press.
KoestlerArthur.1972. The Case of the Midwife Toad . New York: Random House.
58.
KrebsH. A.1954. “Excursion into the Borderland of Biochemistry and Philosophy. ” Bulletin of the Johns Hopkins Hospital 95: 45–51.
59.
LamarckJean-Baptiste.1801. Histoire naturelle des animaux sans vertèbres . Paris: Déterville.
60.
LamarckJean-Baptiste.1802a. Hydrogéologie, ou Recherches sur l'influence qu'ont les eaux sur la surface du globe terrestre . Paris: Chez l'auteur.
61.
LamarckJean-Baptiste.1802b. Recherches sur l'organisation des corps vivans . Paris: Chez l'auteur et Maillard.
62.
LamarckJean-Baptiste.1809. Philosophie zoologique, ou, Exposition des considérations relative à l'histoire naturelle des animaux . 2 vols. Paris: Dentu.
63.
LarsonEdward.2004. Evolution: The Remarkable History of a Scientific Theory . New York: Modern Library.
64.
MartinBrian.2002. “Dilemmas of Defending Dissent: The Dismissal of Ted Steele from the University of Wollongong. ” Australian Universities’ Review 45 (2): 7–17.
65.
MaturanaHumberto, and VarelaFrancisco. 1980. Autopoiesis and Cognition: The Realization of the Living . Dordrecht: Reidel.
66.
Maynard SmithJohn.1982. Evolution and the Theory of Games . Cambridge and New York: Cambridge University Press.
67.
Maynard SmithJohn, and PriceG. R.. November 2, 1973. “The Logic of Animal Conflict. ” Nature 246: 15–18.
68.
MayrErnst.1988. Toward a New Philosophy of Biology: Observations of an Evolutionist . Cambridge: Harvard University Press.
69.
McClintockBarbara. November 16, 1984. “The Significance of Responses of the Genome to Challenge. ” Science 226: 792–801.
70.
McEachernLori A., and LloydVett. 2011. “The Epigenetics of Genomic Imprinting: Core Epigenetic Processes are Conserved in Mammals, Insects, and Plants. ” In Epigenetics: Linking Genotype and Phenotype in Development and Evolution , 43–69. Berkeley: University of California Press.
71.
MoxonE. R., RaineyP. B., NowakM. A., and LenskiR. A.. 1994. “Adaptive Evolution of Highly Mutable Loci in Pathogenic Bacteria. ” Current Biology 4: 24–33.
72.
MüllerGerd B.2010. “Epigenetic Innovation. ” In Evolution: The Extended Synthesis , edited by PigliucciMassimo and MüllerGerd B., 307–332. Cambridge: MIT Press.
73.
MüllerGerd B., and NewmanStuart A.. 2003. “Origination of Organismal Form: The Forgotten Cause in Evolutionary Theory. ” In The Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary Biology , 3–10. Cambridge: MIT Press.
74.
MyersNatasha. forthcoming 2015. Rendering Life Molecular: Models, Modelers and Excitable Matter . Durham: Duke University Press.
75.
NewmanStuart A.2003. “The Fall and Rise of Systems Biology: Recovering from a Half-Century Gene Binge. ” GeneWatch 16 (4): 8–12.
76.
NewmanStuart A., and BhatRamray. 2011. “Lamarck's Dangerous Idea. ” In Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by GissisSnait B. and JablonkaEva, 157–170. Cambridge: MIT Press.
77.
NewmanStuart A., and MüllerGerd B.. 2006. “Genes and Form: Inherency in the Evolution of Developmental Mechanics. ” In Genes in Development: Re-reading the Molecular Paradigm , edited by Newmann-HeldE. M. and Rehmann-SutterC., 38–73. Durham: Duke University Press.
78.
ParacandolaM.1995. “Philosophy in the Laboratory: The Debate Over Evidence for E.J. Steele's Lamarckian Hypothesis. ” Studies in the History and Philosophy of Science 26: 469–492.
79.
PasquierÉtienne.1832. Éloge de M. le baron Georges Cuvier. Chambre des Pairs. Séance du 17 décembre 1832 . Paris: [s.n.].
80.
PasteurLouis.1922. “‘Des Générations spontanées’ (7 April 1864). ” In Œuvres de Pasteur, Vol. 2: Fermentations et générations dites spontanées , 328–346. Paris: Masson.
81.
Piattelli-PalmariniMassimo.1989. “Evolution, Selection, and Cognition: From ‘Learning’ to Parameter Setting in Biology and in the Study of Language. ” Cognition 31: 1–44.
82.
PigliucciMassimo, and MüllerGerd B., eds. 2010. Evolution: The Extended Synthesis . Cambridge: MIT Press.
83.
RidleyMark.1985. The Problems of Evolution . Oxford: Oxford University Press.
84.
RudwickMartin.1972. The Meaning of Fossils: Episodes in the History of Palaeontology . New York: Elsevier.
85.
Schimansky-GeierLutz, FiedlerBernold, KurthsJ., and SchöllEckehard, eds. 2007. Analysis and Control of Complex Non-Linear Processes in Physics, Chemistry and Biology . London: World Scientific Publishing Company.
86.
ShapiroJames A.2007. “Bacteria Are Small But Not Stupid: Cognition, Natural Genetic Engineering and Socio-Bacteriology. ” Studies in the History and Philosophy of Biological and Biomedical Sciences 38: 807–819.
87.
ShapiroJames A.2011. Evolution: A View from the 21st Century . Upper Saddle River: FT Press Science.
SmailDaniel Lord.2007. On Deep History and the Brain . Berkeley: University of California Press.
90.
SmithJustin E.H.2002. “Leibniz's Hylomorphic Monad. ” History of Philosophy Quarterly 19 (1): 21–42.
91.
SoléRicard V., and GoodwinBrian. 2000. Signs of Life: How Complexity Pervades Biology . New York: Basic Books.
92.
SpencerHerbert. 1898–1900. The Principles of Biology. 1864 . Revised and expanded ed. 2 vols. New York: D. Appleton & Co.
93.
SteeleEdward J.1981. Somatic Selection and Adaptive Evolution: On the Inheritance of Acquired Characters . 2nd ed. Chicago: University of Chicago Press.
94.
SterelnyKim.2007. Dawkins vs. Gould: Survival of the Fittest . New ed. Thriplow: Icon.
95.
StresemannErwin.1975. “
Ornithology from Aristotle to the Present. 1951. ” In
Translated by Hans J. Epstein and Cathleen Epstein, edited by William CottrellG., with a foreword and epilogue by Ernst Mayr. Cambridge: Harvard University Press.
96.
Von NeumannJohn.1966. Theory of Self-Reproducing Automata . edited by Arthur W. Burks. Urbana: University of Illinois Press.
97.
WaddingtonC. H.1939. An Introduction to Modern Genetics . London: Allen & Unwin.
98.
WaddingtonC. H.1940. Organisers and Genes . Cambridge: Cambridge University Press.
99.
WaddingtonC. H.1957. The Strategy of the Genes: A Discussion of Some Aspects of Theoretical Biology . London: Allen & Unwin.
100.
WeismannAugust.1882. “On the Mechanical Conception of Nature. ” In Studies in the Theory of Descent , edited and translated by MeldolaRaphael, 2, 634–718. London: Sampson, Low, Marston, Searle, and Rivington.
101.
WeismannAugust.1889. “The Supposed Transmission of Mutations.” 1888. In Essays Upon Heredity and Kindred Biological Problems , edited and translated by PoultonEdward B., SchönlandSelmar, and ShipleyArthur E., 1, 385–417. Oxford: Clarendon Press.
102.
WeismannAugust.1893. The Germ-Plasm: A Theory of Heredity . Translated by W. Newton Parker and Harriet Rönnfeldt. New York: Scribner's.
103.
ZhivotovskyL. A.2002. “A Model of the Early Evolution of Soma-to-Germline Feedback. ” Journal of Theoretical Biology 216 (1): 51–57.