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Research article

First published 2000-02

A Greedy Algorithm for Aligning DNA Sequences

Zheng Zhang, Scott Schwartz, Lukas Wagner [...]

Journal of Computational Biology

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Research article

First published 2021-08-11

Multiple sequence alignment using enhanced bird swarm align algorithm

Hafiz Asadul Rehman, Kashif Zafar, Ayesha Khan [...]

Journal of Intelligent & Fuzzy Systems: Applications in Engineering and Technology

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Research article

First published 2018-2

An accurate algorithm for multiple sequence alignment in MapReduce

Gaifang Dong, Xueliang Fu, Honghui Li [...]

Journal of Computational Methods in Sciences and Engineering

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Research article

First published 2001-04

A Sequence Alignment Algorithm with an Arbitrary Gap Penalty Function

T. Gregory Dewey

Journal of Computational Biology

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Research article

First published 2001-06

Tsukuba BB: A Branch and Bound Algorithm for Local Multiple Alignment of DNA and Protein Sequences

Paul Horton

Journal of Computational Biology

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Research article

First published 2018-10

Parallel Tiled Codes Implementing the Smith–Waterman Alignment Algorithm for Two and Three Sequences

Marek Palkowski, Wlodzimierz Bielecki

Journal of Computational Biology

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Research article

First published 2011-09

An Algorithm to Solve the Motif Alignment Problem for Approximate Nested Tandem Repeats in Biological Sequences

Atheer A. Matroud, Christopher P. Tuffley, Michael D. Hendy

Journal of Computational Biology

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Research article

First published

PROFALIGN Algorithm Identifies the Regions Containing Folding Determinants by Scoring Pairs of Hydrophobic Profiles of Remotely Related Proteins

Olga Tcheremenskaia, Alessandro Giuliani, Maurizio Tomasi

Journal of Computational Biology

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Research article

First published 2000-10

The Practical Use of the A * Algorithm for Exact Multiple Sequence Alignment

Martin Lermen, Knut Reinert

Journal of Computational Biology

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Research article

First published 2004-08

An Efficient Z-Score Algorithm for Assessing Sequence Alignments

Hilary S. Booth, John H. Maindonald, Susan R. Wilson [...]

Journal of Computational Biology

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