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Research article

First published 2026

Application of graph alignment techniques for identifying sources of non-determinism in MPI simulations

Dhroov Pandey, Jack Marquez, Michela Taufer [...]

The International Journal of High Performance Computing Applications

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Research article

First published 2019-1

Sequence Alignment on Directed Graphs

Vaddadi Naga Sai Kavya, Kshitij Tayal, Rajgopal Srinivasan [...]

Journal of Computational Biology

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Research article

First published 2020-04

On the Complexity of Sequence-to-Graph Alignment

Chirag Jain, Haowen Zhang, Yu Gao [...]

Journal of Computational Biology

Open access

Research article

First published 2022-4-6

Discovering alignment relations with Graph Convolutional Networks: A biomedical case study

Pierre Monnin, Chedy Raïssi, Amedeo Napoli [...]

Semantic Web: – Interoperability,Usability,Applicability

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Research article

First published 2022-12

On the Hardness of Sequence Alignment on De Bruijn Graphs

Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru

Journal of Computational Biology

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Research article

First published 2017-12

The Application of the Weighted k -Partite Graph Problem to the Multiple Alignment for Metabolic Pathways

Wenbin Chen, William Hendrix, Nagiza F. Samatova

Journal of Computational Biology

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Research article

First published 2024-3-21

Entity alignment with fusing relation representation

Li Feng Ying, Li Jia Peng, Dong Rong Sheng

The European Journal on Artificial Intelligence

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Research article

First published 2003-12

An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences

Yu Zhang, Michael S. Waterman

Journal of Computational Biology

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Research article

First published 2006-03

A Polynomial Time Solvable Formulation of Multiple Sequence Alignment

Sing-Hoi Sze, Yue Lu, Qingwu Yang

Journal of Computational Biology

Open access

Research article

First published 2026-1

Analysis of the Performance of Representation Learning Methods for Entity Alignment: Benchmark Versus Real-World Data

Ensiyeh Raoufi, Bill Gates Happi Happi, Pierre Larmande [...]

Semantic Web: – Interoperability,Usability,Applicability

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