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Open access

Research article

First published 2015

Differential Expression Analysis for RNA-Seq: An Overview of Statistical Methods and Computational Software

Huei-Chung Huang, Yi Niu, Li-Xuan Qin

Cancer Informatics

Open access

Research article

First published 2022

Bioinformatics Analysis of Differential Gene and MicroRNA Expression in Lung Adenocarcinoma: Genetic Effects on Patient Prognosis,as Indicated by the TCGA Database

Bingqing Sun, Hongwen Zhao

Cancer Informatics

Open access

Research article

First published 2026

Depower: An R Package for Simulation-Based Power Analysis of Differential Expression Studies

Brett Klamer, Lianbo Yu

Cancer Informatics

Open access

Research article

First published 2026

SeqExpressionAnalyser: An R Package for Automated End-to-End RNA-Seq Analysis From Reads to Differential Expression

Sanae Esskhayry, Ouafae Kaissi, Fouzia Radouani [...]

Bioinformatics and Biology Insights

Open access

Research article

First published 2024

GOTermViewer: Visualization of Gene Ontology Enrichment in Multiple Differential Gene Expression Analyses

Milene Volpato, Mark Hull, Ian M Carr

Bioinformatics and Biology Insights

Open access

Research article

First published 2020-5

Identification of differentially expressed genes between the colon and ileum of patients with inflammatory bowel disease by gene co-expression analysis

Yuting Zhang, Bo Shen, Liya Zhuge [...]

Journal of International Medical Research

Free access

Research article

First published 2008-11

Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer

Yury V. Kondrakhin, Ruslan N. Sharipov, Alexander E. Kel [...]

In Silico Biology

Open access

Research article

First published 2007

Estimating the False Discovery Rate Using Mixed Normal Distribution for Identifying Differentially Expressed Genes in Microarray Data Analysis

Akihiro Hirakawa, Yasunori Sato, Takashi Sozu [...]

Cancer Informatics

Open access

Research article

First published 2010-08

Introducing Knowledge into Differential Expression Analysis

Ewa Szczurek, Przemysław Biecek, Jerzy Tiuryn [...]

Journal of Computational Biology

Free access

Research article

First published 2015-12

Analysis of Differentially Expressed Genes Associated With Alzheimer’s Disease Based on Bioinformatics Methods

Bo Feng, Peng Hu, Jinbo Chen [...]

American Journal of Alzheimer's Disease & Other Dementias®

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