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Research article

First published 2011-8

Identification of c-Myb Target Genes in K562 Cells Reveals a Role for c-Myb as a Master Regulator

Petra Isabel Lorenzo, Elen Margrethe Brendeford, Siv Gilfillan [...]

Genes & Cancer

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Research article

First published 2024-06

Transcriptional Hubs Within Cliques in Ensemble Hi-C Chromatin Interaction Networks

Gatis Melkus, Andrejs Sizovs, Peteris Rucevskis [...]

Journal of Computational Biology

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Research article

First published 2022-02

Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression

Yuxuan Du, Sarah M. Laperriere, Jed Fuhrman [...]

Journal of Computational Biology

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Research article

First published 2024-09

SuperTAD-Fast: Accelerating Topologically Associating Domains Detection Through Discretization

Zhao Ling, Yu Wei Zhang, Shuai Cheng Li

Journal of Computational Biology

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Research article

First published 2013-11

3D Chromosome Modeling with Semi-Definite Programming and Hi-C Data

ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh [...]

Journal of Computational Biology

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Research article

First published 2016-06

Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations

Emre Sefer, Geet Duggal, Carl Kingsford

Journal of Computational Biology

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Research article

First published 2016-10

The Sea Urchin sns5 Chromatin Insulator Shapes the Chromatin Architecture of a Lentivirus Vector Integrated in the Mammalian Genome

Elena Baiamonte, Giovanni Spinelli, Aurelio Maggio [...]

Nucleic Acid Therapeutics

Open access

Research article

First published 2020-04

A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

Marco Cavalli, Klev Diamanti, Gang Pan [...]

OMICS: A Journal of Integrative Biology

Open access

Research article

First published 2023-09-07

Suppression of Krüppel-like factor 5 basal expression by CREB1 binding to far distal element

Nozomi Mihara, Kazushi Imai

Tumor Biology

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