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Research article

First published 2016-06

ALFRED: A Practical Method for Alignment-Free Distance Computation

Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu [...]

Journal of Computational Biology

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Research article

First published 2017-02

Zika and Flaviviruses Phylogeny Based on the Alignment-Free Natural Vector Method

Yongkun Li, Lily He, Rong Lucy He [...]

DNA and Cell Biology

Open access

Research article

First published 2019

SWSPM: A Novel Alignment-Free DNA Comparison Method Based on Signal Processing Approaches

Tomáš Farkaš, Jozef Sitarčík, Broňa Brejová [...]

Evolutionary Bioinformatics

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Research article

First published 2019-06

Toward an Alignment-Free Method for Feature Extraction and Accurate Classification of Viral Sequences

Dylan Lebatteux, Amine M. Remita, Abdoulaye Baniré Diallo

Journal of Computational Biology

Open access

Research article

First published 2006

Pattern-Based Phylogenetic Distance Estimation and Tree Reconstruction

Michael Höhl, Isidore Rigoutsos, Mark A. Ragan

Evolutionary Bioinformatics

Open access

Research article

First published 2016

A Novel Method for Alignment-free DNA Sequence Similarity Analysis Based on the Characterization of Complex Networks

Jie Zhou, Pianyu Zhong, Tinghui Zhang

Evolutionary Bioinformatics

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Research article

First published 2023-04

Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data

Prakash Chourasia, Sarwan Ali, Simone Ciccolella [...]

Journal of Computational Biology

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Research article

First published 2016-10

Descriptive Statistics of the Genome: Phylogenetic Classification of Viruses

Troy Hernandez, Jie Yang

Journal of Computational Biology

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Research article

First published 2014-12

A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform

Changchuan Yin, Xuemeng E. Yin, Jiasong Wang

Journal of Computational Biology

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Research article

First published 1994-3

Constructing Aligned Sequence Blocks

Webb Miller, Mark Boguski, Balaji Raghavachari [...]

Journal of Computational Biology

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