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Research article

First published 2004-11

Genome-Wide Prediction and Analysis of Function-Specific Transcription Factor Binding Sites

Fan Long, Hong Liu, Chang Hahn [...]

In Silico Biology

Open access

Research article

First published 2016

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

Jacqueline M. Dresch, Rowan G. Zellers, Daniel K. Bork [...]

Gene Regulation and Systems Biology

Retricted access

Research article

First published 2006-05

Enhancing the Prediction of Transcription Factor Binding Sites by Incorporating Structural Properties and Nucleotide Covariations

Sumedha Gunewardena, Peter Jeavons, Zhaolei Zhang

Journal of Computational Biology

Free access

Research article

First published 2004-11

Annotating Significant Pairs of Transcription Factor Binding Sites in Regulatory DNA

Katja Rateitschak, Tobias Müller, Martin Vingron

In Silico Biology

Free access

Research article

First published 2006-7

MACO: A Gapped-Alignment Scoring Tool for Comparing Transcription Factor Binding Sites

Gang Su, Binchen Mao, Jin Wang

In Silico Biology

Free access

Research article

First published 2004-11

An Organizational Model of Transcription Factor Binding Sites for a Histone Promoter in D. melanogaster

Mack E. Crayton III, Carll E. Ladd, Martin Sommer [...]

In Silico Biology

Free access

Research article

First published 2003-2

Combining Genome and Mouse Knockout Expression Data to Highlight Binding Sites for the Transcription Factor HNF1α

Christopher R. Lockwood, Timothy M. Frayling

In Silico Biology

Free access

Research article

First published 2002-2

AliBaba2: Context Specific Identification of Transcription Factor Binding Sites

Niels Grabe

In Silico Biology

Open access

Research article

First published 2015

An Empirical Prior Improves Accuracy for Bayesian Estimation of Transcription Factor Binding Site Frequencies within Gene Promoters

Stephen A. Ramsey

Bioinformatics and Biology Insights

Free access

Research article

First published 2006-5

AthaMap: From in silico Data to Real Transcription Factor Binding Sites

Lorenz Bülow, Nils Ole Steffens, Claudia Galuschka [...]

In Silico Biology

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