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Research article

First published 2000-02

A Discriminative Framework for Detecting Remote Protein Homologies

Tommi Jaakkola, Mark Diekhans, David Haussler

Journal of Computational Biology

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Research article

First published 2004-10

A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE

Yuting Jia, T. Gregory Dewey, Ilya N. Shindyalov [...]

Journal of Computational Biology

Open access

Research article

First published 2009

Clustering Protein Sequences Using Affinity Propagation Based on an Improved Similarity Measure

Fan Yang, Qing-Xin Zhu, Dong-Ming Tang [...]

Evolutionary Bioinformatics

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Research article

First published 2003-12

Combining Pairwise Sequence Similarity and Support Vector Machines for Detecting Remote Protein Evolutionary and Structural Relationships

Li Liao, William Stafford Noble

Journal of Computational Biology

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Research article

First published 2023-01-30

Protein remote homology recognition using local and global structural sequence alignment

Sajithra Nakshathram, Ramyachitra Duraisamy

Journal of Intelligent & Fuzzy Systems: Applications in Engineering and Technology

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Research article

First published 2003-04

Protein Family Classification Using Sparse Markov Transducers

Eleazar Eskin, William Stafford Noble, Yoram Singer

Journal of Computational Biology

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Research article

First published

A Reduction-Based Exact Algorithm for the Contact Map Overlap Problem

Wei Xie, Nikolaos V. Sahinidis

Journal of Computational Biology

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Research article

First published 2006-01

Flexible Secondary Structure Based Protein Structure Comparison Applied to the Detection of Circular Permutation

Jakob Vesterstr⊘m, William R. Taylor

Journal of Computational Biology

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Research article

First published 2002-10

A Novel Approach to Remote Homology Detection: Jumping Alignments

Rainer Spang, Marc Rehmsmeier, Jens Stoye

Journal of Computational Biology

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Research article

First published 2005-07

Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs

Jun Huan, Deepak Bandyopadhyay, Wei Wang [...]

Journal of Computational Biology

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