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Retricted access

Research article

First published 2014-8

Inferring phylogenetic trees using pseudo-Boolean optimization

Miguel Miranda, Inês Lynce, Vasco Manquinho

The European Journal on Artificial Intelligence

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Research article

First published 2018-03

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting

Ruofan Xia, Yu Lin, Jun Zhou [...]

Journal of Computational Biology

Open access

Research article

First published 2018

SWPhylo – A Novel Tool for Phylogenomic Inferences by Comparison of Oligonucleotide Patterns and Integration of Genome-Based and Gene-Based Phylogenetic Trees

Xiaoyu Yu, Oleg N Reva

Evolutionary Bioinformatics

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Research article

First published 2006-10

On the Repeat-Annotated Phylogenetic Tree Reconstruction Problem

Firas Swidan, Michal Ziv-Ukelson, Ron Y. Pinter

Journal of Computational Biology

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Research article

First published 2002-04

A Structural EM Algorithm for Phylogenetic Inference

Nir Friedman, Matan Ninio, Itsik Pe'er [...]

Journal of Computational Biology

Open access

Review article

First published 2008

Strategies for Reliable Exploitation of Evolutionary Concepts in High Throughput Biology

Anthony Levasseur, Pierre Pontarotti, Olivier Poch [...]

Evolutionary Bioinformatics

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Research article

First published 2018-3

MrBayes sMC 3

Lídia Kuan, Frederico Pratas, Leonel Sousa [...]

The International Journal of High Performance Computing Applications

Open access

Research article

First published 2010

Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference versus Group-Specific Taxon Sampling

Alexandros Stamatakis, Markus Göker, Guido W. Grimm

Evolutionary Bioinformatics

Open access

Research article

First published 2021

The Functional Classification of ORF8 in SARS-CoV-2 Replication,Immune Evasion,and Viral Pathogenesis Inferred through Phylogenetic Profiling

Muhamad Fahmi, Hiromu Kitagawa, Gen Yasui [...]

Evolutionary Bioinformatics

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Research article

First published 2020-10

Canine Visceral Leishmaniasis in São Paulo,Brazil,the Most Populous City of South America: Isolation,Molecular Diagnosis,and Phylogenetic Inferences

Arlei Marcili, Ryan Emiliano da Silva, Vilma Pereira da Costa [...]

Vector-Borne and Zoonotic Diseases

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