Mietchen et al. claimed in previous work that strong static magnetic fields change the cell cortex in dejellied fertilizable stage VI Xenopus lavis oocytes. We present here a formalization of that claim, stating that all things of class “strong static magnetic field” that are in the context of a thing of class “dejellied fertilizable stage VI Xenopus laevis oocyte” generally have a relation of type “affects” to a thing of class “cell cortex” in the same context.
Mietchen et al. [2] state that “A complex reorganization of cortical pigmentation was found in dejellied eggs as a function of the magnetic field and the field exposure time”. We present here a formalization of the main scientific claim from this quote by using a semantic template called the super-pattern [1].
In the context class, we use the class “dejellied fertilizable stage VI Xenopus laevis oocyte” (Q107644116) from Wikidata. In the subject class, we use the class “strong static magnetic field” (Q107644241) from Wikidata. In the object class, we use the class “cell cortex” (Q5058180) from Wikidata.
RDF code
This is our formalization as a nanopublication in TriG format:
sub:Head { this: np:hasAssertion sub:assertion ; np:hasProvenance sub:provenance ; np:hasPublicationInfo sub:pubinfo ; a np:Nanopublication .}sub:assertion { sub:spi a sp:SuperPatternInstance ; rdfs:label "Strong static magnetic fields change the cell cortex in dejellied fertilizable stage VI Xenopus lavis oocytes." ; sp:hasContextClass <http://www.wikidata.org/entity/Q107644116> ; sp:hasSubjectClass <http://www.wikidata.org/entity/Q107644241> ; sp:hasQualifier sp:generallyQualifier ; sp:hasRelation sp:affects ; sp:hasObjectClass <http://www.wikidata.org/entity/Q5058180> .}sub:provenance { sub:activity a sp:FormalizationActivity ; prov:used sub:quote , <https://doi.org/10.1186/1477-044X-3-2> ; prov:wasAssociatedWith orcid:0000-0001-9488-1870 . sub:assertion prov:wasGeneratedBy sub:activity . sub:quote prov:value "A complex reorganization of cortical pigmentation was found in dejellied eggs as a function of themagnetic field and the field exposure time." ; prov:wasQuotedFrom <https://doi.org/10.1186/1477-044X-3-2> .}sub:pubinfo { sub:sig npx:hasAlgorithm "RSA" ; npx:hasPublicKey"MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCJlM78d80R+gFMoQB1IG3f7AbqqGOCIv4HmZd1cx1KgEWMUUpPsojFNvx84fC/TltcJ8F8JafnbhDXW2HM2MhdK4yC04ROEV1vIgSzjDicHfiqXvMqdPuMyQp4mmCEY7mUoeEW10mWZqjk+S9TnmiAQbFGcpExP8aosr2aTR7CSQIDAQAB" ; npx:hasSignature"akW42kGSMe1sO8SU8VqcxrOSssOW3LLBQONsJBvsigKDV8AiBQ/MaR30ve20LhTgtrFQrwB1jA9ZhCy9zrYxyKVCRKvJzovPppGaTyHd8KCeAhsN0ZmSuu2XKUHqbiepzahoPyxX0GdqCox9PS9D6ssFe8WoRHPVRk3Jzwd5k1I=" ; npx:hasSignatureTarget this: . this: dct:created "2021-12-17T11:18:24.918+01:00"^^xsd:dateTime ; dct:creator orcid:0000-0001-9488-1870 , orcid:0000-0002-7114-6459 ; npx:introduces sub:spi ; <https://w3id.org/linkflows/reviews/isUpdateOf> <http://purl.org/np/RA2JlYTWhC4PuhqFITergBXYM0CdZ_H-uTJ751rOIntlU> ; nt:wasCreatedFromProvenanceTemplate <http://purl.org/np/RAE1wniOy0yO39PlK9QkQ-wqbC3q-R2nXraP5huu8W39k> ; nt:wasCreatedFromPubinfoTemplate <http://purl.org/np/RA2vCBXZf-icEcVRGhulJXugTGxpsV5yVr9yqCI1bQh4A> ,<http://purl.org/np/RAA2MfqdBCzmz9yVWjKLXNbyfBNcwsMmOqcNUxkk1maIM> ,<http://purl.org/np/RAOGu9Lh0BD4tbIRB9RG6RGRA_ObDh75NTbIqaWgxxs8M> , <http://purl.org/np/RAWv_eqe4tghg-OOg6NqRQODjC865Q0ZWkXTxqjSe59Y4> ; nt:wasCreatedFromTemplate <http://purl.org/np/RAv68imZrEjfcp2rnEg1hzoBqEVc0cQMtp9_1Za0BxNM4> .}
References
1.
C.I.Bucur, T.Kuhn, D.Ceolin and J.van Ossenbruggen, Expressing high-level scientific claims with formal semantics, in: Proceedings of the 11th Knowledge Capture Conference, 2021. doi:10.1145/3460210.3493561.
2.
D.Mietchen, J.W.Jakobi and H.P.Richter, Cortex reorganization of Xenopus laevis eggs in strong static magnetic fields, BioMag Res Tech3 (2005), 2. doi:10.1186/1477-044X-3-2.
