Abstract
Until relatively recently, the extent of microbiota presence in the human breast was under-appreciated. A high-throughput sequencing study and culture-based studies have demonstrated the extensive presence of microbes in human milk, with their origin believed to be from the skin, oral cavity and via gut translocation. Since formula milk substitutes do not contain these bacteria, what benefits are denied to these infants? The addition of probiotic bacteria to some infant formula is meant to provide some benefits, but these only contain one species and the dose is relatively high compared with breast milk. Many questions of importance to women's health arise from these findings. When, how and what types of microbes colonize the breast at different stages of a woman's life, including postlactation, and what effect do they have on the host in the short and long term? This article discusses some aspects of these questions.
The Human Microbiome Project has been a catalyst for studies designed to log the microbes that inhabit the body and determine what role they play in health and disease. Some of these studies have examined the unique anatomical sites of women, namely in the reproductive tract, revealing a plethora of microbes and a dynamic milieu that can change in composition within days, or show signs of stability over months [1–5]. The high-throughput sequencing tools that have emerged in recent times have allowed in-depth coverage of the organisms that can inhabit different sites. These tools have complemented culture-based methods used to isolate microorganisms. The application of these systems to study the female breast has begun to reveal the breadth of microbes present in this gland, at least from the perspective of organisms in human milk.
Breast milk is the first food given to newborn humans and it contains all that the child requires with regards to nutritional requirements. The average amount of milk consumed by infants varies with age. A study by Kent
Milk is easily digested by the immature intestinal tract, and the initial colostrum, which delivers protective antibodies, immune competent cell types (e.g., macrophages, granulocytes and T and B lymphocytes) [8] and a complex network of chemoattractants, activators and anti-inflammatory cytokines that help prevent disease while the neonatal immune system is still developing. Milk also provides iron-binding protein, lactoferrin, lysozyme, lactoperoxidase and hydrogen peroxide and oligosaccharides, which inhibit bacterial invasion of the infant gut. Infant formula milk does not deliver the full immunological, host-derived products of breast milk.
The main focus of this article is to discuss the current understanding of bacteria found in the female breast, particularly in milk, and how these might influence the microbial composition and health of the newborn. We will also discuss how probiotics may modulate the composition of human milk and the well-being of the infant, and how breast milk banking and infant formula substitutes may eventually better mimic human milk. In addition, we discuss a relatively new area of breast microbiota influencing health beyond lactation, such as cancer.
What bacteria are in breast milk?
As long ago as 1924, streptococci were isolated from human milk [9] and since then numerous studies have detected
In the 1970s there was a rapid increase in the number of breast milk banks for neonates in intensive care and also due to the controversy of using infant milk formulas. Microbiological and biochemical analyses of donor milk again revealed the presence of Gram-positive cocci [2,19–23]. Williamson
It is intriguing that none of the reports suggested that this range of organisms, many with the capability of inducing infection at other body sites, were causing pathogenesis in the breast. Why, we might ask? If the bacteria are multiplying, presumably they could be producing toxins, hemolysins and some of the known range of virulence factors found in streptococci, staphylococci and oral cavity inhabitants [24–26]. The breast is known to have a range of antimicrobial defenses from first-line lactoferrin, complement, lysozyme, cytokines and immunoglobulins to pattern recognition receptors and Toll-like receptors that activate defenses [27]. With macrophages, lymphocytes and neutrophils there is no shortage of factors that under other circumstances would induce an inflammatory response and signs and symptoms of the host fighting an infection. In human milk, secretory IgA is in abundance and yet none of these factors eradicate the microbiota. Bacterial biofilm formation or immune tolerance may explain this failure, but at the very least these are worthy of further investigation. Biofilms are aggregates of bacteria that adhere to each other and to other surfaces. Quiescent biofilms have been described in many human tissues, for example the bladder [28].
The first noncultural analysis of human milk started occurring in the year 2000 by the use of denaturing gradient gel electrophoresis and 16S rRNA clone library analysis, which confirmed the general composition described by culture studies but showed that a wider array of microorganism diversity is present [11,14]. It also emerged that individuals had somewhat distinct microbiota profiles [14]. The first deep sequencing analysis was performed by Hunt
How do the bacteria get to the breast?
Until recently, it was generally assumed that the newborn gut becomes colonized by microbes through the birthing process, handling and the environment. But a 2011 DNA-based study of 700 bacterial isolates showed that the same strains of bacteria could be recovered from human milk, the mothers feces and the new-born's feces, supporting the hypothesis that vertical transfer of intestinal bacteria from the mother's gut to her milk occurs [30]. Three potential mechanisms now exist on how bacteria reach the breast in addition to via the skin and nipple: translocation across the mucosal membranes of the mouth, intestine, urogenital tract and skin, entry through the bloodstream via oral hygiene care, and dendritic cell (DC) sampling of the intestine and transfer through the bloodstream and mesenteric lymph nodes (

One study of breast milk and peripheral blood collected aseptically from healthy donors at various times after delivery examined bacterial ribosomal DNA content in milk cells, maternal peripheral blood mononuclear cells and feces, and corresponding infant feces [31]. Breast milk contained alow total concentration of microbes (1 × 103 CFU/ml) and maternal blood and milk cells contained the genetic material of a large biodiversity of enteric bacteria. Some bacterial signatures were common to infant feces and to samples of maternal origin, for example
Mucosal translocation can occur with bacteria crossing over the gut epithelium into the bloodstream either through gap junctions between epithelial cells or by invading cells or through uptake in DCs. Rather than always being detrimental, this is a protective mechanism that provides the host's defenses with constant external antigen contact, similar to a monitoring system. The process was shown in healthy animals and low numbers of bacteria penetrated systemically into the tissues of the spleen and liver [34]. An elegant study in mice showed increased bacterial translocation from the gut during pregnancy and lactation, and the presence of DCs loaded with bacteria in lactating breast tissue [35]. In addition, they showed that human peripheral blood mononuclear cells and breast milk cells contained bacteria during lactation.
Bacterial interactions in the breast
Apart from studies showing that some pathogens cause infection in the breast, it is not at all clear what the bulk of the organisms are doing to the breast. As depicted in

From the nature of the species identified to date, and the fact that many different types appear to coexist [29], one may predict that several bacteria–bacteria interactions occur. This may include bacteriocin production, cell–cell signaling and symbiotic relationships based upon each species' nutritional requirements. Studies in the oral cavity reveal how these types of bacterial communities are established and provide examples of these interactions taking place. The breast microbiome may or may not be as well organized as the oral cavity in terms of succession of strains colonizing and specific ways they coaggregate with one another [36,37], but as with any community, there is likely to be competition. Compounds produced by one bacterium to inhibit another are common, and Heikkila
In such ecosystems, bacteria communicate using signaling molecules, some of which can also be bacteriocins. A recent review covers this area in depth and not only discusses the bacteria–bacteria communication systems, but also how some bacteria can hijack host hormones and how interkingdom (bacteria–host) communication, such as epinephrine/norepinephrine/auto-inducer-3, can benefit the organisms [38]. The same research group has also shown that in the gut, bacteria utilize chemical-sensing systems to determine which niche will be good for colonization [39]. This may explain why some species have not yet been detected in the breast.
Are the breast bacteria important for the infant?
The effect that the transfer of nonpathogens and potentially deleterious bacteria have on infants has not been well studied, but these species can influence the risk of allergy, diabetes, inflammatory bowel disease (IBD), celiac disease, obesity and diseases such as multiple sclerosis [40–44]. This could be due to several mechanisms, the most plausible being immune modulation, and through metabolites from bacterial growth in breast or formula milk.
Studies indicate that early bacterial colonizers in the newborn play a role in defense against pathogens [45], maturation of both the systemic and mucosal immune systems and micro vasculature of the gut [46–48], establishment of the microbiome across body sites [49,50], directing the immune system and in some cases errantly, to increase the risk of allergic responses, synthesis of vitamins and digestion of insoluble compounds, and increased integrity of the gut epithelium (i.e., to prevent noxious substances and pathogens from gaining access to the periphery). Mounting evidence in recent years has shown that the gut microbiota plays an important role in modulating the risk of IBD, Type II diabetes and allergy [48]. In an animal model studying necrotizing enterocolitis (NEC) it was shown that the transfer of an adult commensal flora to neonatal mice lead to severe NEC, however, pups that were dam fed were protected against the disease [51]. In studies that have sought to identify which microbes colonize the host's gut in the days following birth, prior to predominant bifidobacteria, some degree of random succession occurs. In some vaginally born infants,
Another example of possible aberrations from the mother–child bacterial transfer and programming scenario is that some diseases of the gut have been rising quite significantly in recent years. Some researchers have suggested that the increase in childhood IBD is associated with elevated numbers of Gram-negative bacteria [53,54]. Thus, conceptually, the abundance profile of the premature infant may suggest a predisposition to IBD, especially if
Breast milk banking as a substitute
‘Wet nursing’ is not new, nor is the collection and donation of human milk, which is often conducted on an informal basis between mothers where required. However there are now companies that sell pasteurized fortified human milk to hospitals for use in neonatal intensive care [201]. There have been breast milk banks in North America and other parts of the world for approximately 100 years but they largely fell out of favor in the 1950s with the availability of powdered infant formula. Now, with additional health benefits of human milk being discovered, there is a renewed interest in its use.
The delivery of human milk goes against the convention of hygiene requirements for food, that is, while it contains numerous and diverse bacterial types, it is not fermented. Bjorksten noted that although breast milk is “contaminated”, it produces no ill effects, perhaps because it also contains antimicrobial properties that protect against infection [57]. He therefore concluded that pasteurization of donated human milk is not necessary (or recommended). Others, such as El-Mohandes [58] and Wright [59], decided that milk containing more than 105 organisms per ml should be discarded before pooling with other samples. However, as with other transference of entire microbiota communities between individuals, such as to treat
Infant formula as a human milk substitute & its pitfalls
The advocates for breastfeeding have been strong since the late 1960s, with universal agreement that human milk is the best source of nourishment for newborns and infants. The WHO recommends that breastfeeding starts within 1 h of birth and that infants should be exclusively fed for 6 months. Globally, less than 40% of infants under 6 months are actually exclusively breast fed [203]. In a survey conducted by Statistics Canada in 2009, it was shown that medical factors were the main reasons cited for mothers not breastfeeding (e.g., C-section, premature birth, multiple births or medical condition of mother or baby) [204].
Unfortunately, in less developed countries, especially where unhygienic conditions exist, the incidence of diarrheal diseases in formula-fed babies is significantly elevated compared with those who are breastfed [63]. This is largely attributable to the contaminated water used to mix the infant formula, but also because the babies do not receive all of the nutritional and protective benefits of the mothers milk, such as the passive protection by immune molecules. Cow's milk also contains immunoglobulin, but in different quantities and proportions of IgG, IgA (lower levels) and IgM classes [64], and unless specifically hyper-immunized against human pathogens to make ‘immune milk’, this will not provide protection for infants in these regions [65].
Possibilities of improving infant formula with probiotics & prebiotics
Probiotics are defined as “live microorganisms which, when administered in adequate amounts, confer a health benefit on the host” [205]. Since 2001, probiotic bacteria have been added to some infant formulas in the USA, with the intent of helping to prevent gastrointestinal infections and antibiotic-associated diarrhea, reduce colic-associated crying, reduce or prevent allergy and improve stool consistency and frequency [66].
A review by the Supplementation of Infant Formula with Probiotics and/or Prebiotics Committee on Nutrition (ESPGHAN) reiterated that the long-term effects of probiotics in infant formula still require monitoring for negative outcomes [66]. A criticism by ESPGHAN was the inadequacy of studies to look for and record adverse events. Potentially, another way to deliver probiotics to the infant would be via ingestion by the mother and then translocation from her gut to the mammary gland. However, this has not been tested so far. In terms of dosage, as noted earlier, the total CFU/ml is higher than that of human milk, and significantly higher in bifidobacterial numbers. Since these products have obtained regulatory approval, they should be safe, but it remains to be seen whether this disproportionate ingestion of bifidobacteria is truly beneficial in all infants, and more so than human milk. One study suggests it is beneficial in vulnerable populations, specifically in infants born to mothers with HIV [67].
Prebiotics are defined as “the selective stimulation of growth and/or activity(ies) of one or a limited number of microbial genus (era)/species in the gut microbiota that confer(s) health benefits to the host” [68]. The use of prebiotics, specifically human milk oligosaccharides (HMOs), are reviewed elsewhere [69]. Suffice to say, breast milk contains 5–10 g/l [56] of HMOs with the highest amounts found at the early stages of lactation [70–74]. Preterm breast milk has higher levels of oligosaccharides than term milk [73,74]. Some infant formulas attempt to match the HMOs. Analysis of the human milk glycobiome (genes that bacteria use to break down complex carbohydrates) have been published relating to intestinal bacteria [75]. Human milk contains hundreds of diverse and complex oligosaccharides, many indigestible by the developing infant, therefore gastrointestinal microbiota are needed, particularly bifidobacteria, to break them down [75]. Interestingly, glycobiome analysis showed that certain bifidobacterial probiotic strains added to infant formula could not utilize HMOs as widely as indigenous species. Also,
HMOs also help prevent infection in breastfed infants by interfering with pathogen adhesion to the host [76]. More widely metabolized prebiotic oligosaccharides have already been added to infant milk formula with positive benefits, such as an increase in lactic acid bacteria and bifidobacteria, decreased diarrhea and decreased rates of infection and allergies [77–81].
Beyond infant feeding: could bacteria have a role in inflammation & breast cancer?
Breast carcinomas occur mostly (75%) in the ducts, followed by the lobes, areola and nipple (Paget's disease). There is also a rare but highly malignant form called inflammatory carcinoma, which appears to occur in younger women [82]. It has been suggested that intestinal bacteria affect the circulation and absorption of female hormones such as estrogen, and this may hold clues as to why certain people develop breast cancer and others do not. Furthermore, high amounts of fat in the diet may increase the risk of breast cancer, and this too may relate to the types of bacteria in the intestine and how they process the fat.
Many bacteria detected in human milk are able to produce carcinogens or other toxic compounds [83–89]. No studies have yet determined if these compounds are produced in breast milk or lactating women, but the possibility is worth pursuing. Secondary amines and high levels of nitrites have been detected and could potentially be used by bacteria, such as
The ability of a number of bacterial species found in breast milk to induce inflammation has been shown, and inflammatory processes have been linked to a number of cancers. Using a systems-biology approach, a recent mouse study showed that during breast-tumor induction and progression, a series of inflammatory processes occurred [92]. Inflammation induced by strains of
Other reviews more adequately cover the topic of the role of inflammation as a risk factor in breast cancer and the development of more aggressive, therapy-resistant estrogen receptor-positive breast cancers [94]. But, clearly an inflammatory microenvironment within the breast, tumor-associated macrophages and proinflammatory cytokines that can act on nearby breast cancer cells and modulate tumor phenotype, and activation of the NF-κB pathway and its cross talk with estrogen receptors, are all important in the cancer process. Bacteria can also induce these responses, but studies are needed to determine if they do this in women who go on to develop breast cancer.
How might lactic acid bacteria reduce the risk of breast cancer?
A case–control study in The Netherlands found a higher incidence of breast cancer among women who consumed significantly lower amounts of fermented milk [95]. From this, the authors concluded that fermented foods could protect against breast cancer, and suggested it was either due to lactic bacteria (especially
Another study that followed women between 1989 and 2006 reported a median reduction in breast cancer mortality (as distinct from incidence of disease), with decreases of 12% in Finland and 16% in Sweden, two of the highest per capita consumers of fermented milks [96]. Yet, in these and the other Scandinavian countries, breast cancer rates have risen steadily since the 1970s and 1980s when more fermented and probiotic milk products became available [97]. So, the issue remains unresolved and with many confounding factors that contribute to health and disease, it will not be an easy one to decipher.
Lactic acid bacteria have been shown to confer anti-inflammatory and anticarcinogenic effects. In a murine model, milk fermented with
A study of 352 women with infectious mastitis showed that daily ingestion of
A huge study of over 140,000 women in 30 countries concluded that the relative risk of breast cancer decreased by 4.3% for every 12 months of breastfeeding in addition to a decrease of 7.0% for each birth, and this was independent of her age when the first child was born [103]. This is contradicted by a more recent study that found that young women (<25 years of age) can have an increased breast cancer risk associated with a completed pregnancy [104], and this is more often fatal two years after delivery, irrespective of breastfeeding [105]. The trend of increased risk of disease persists for up to 15 years. If pathogenic bacteria play a role in breast cancer, the vital step could be the arrival of the organisms due to the translocation process described above [34], not necessarily the persistent production and release of milk. For some younger women, perhaps specific aberrations in their mucosal microbiota play a role.
If we hypothesize that lobes and ducts abundant with lactic acid bacteria lower the risk of cancer, what mechanisms might this involve? One possibility is that these organisms metabolize or secrete compounds that break down carcinogens. For example, lactosylceramide is an effector molecule with an important role in stimulus/agonist-mediated signaling and regulation of cellular processes. It is proinflammatory and potentially protumorigenic, and it may play a role in multidrug resistance in tumor cells [106]. Some organisms found in the gut and human milk can degrade lactosylceramide and thereby increase ceramide proapoptotic signaling molecules, so this is one means for possibly lowering carcinogenesis [107]. In addition, members of the intestinal microbiota,
Conclusion
The detection of multiple bacterial types in human milk indicates that an association between milk, microbes and humans has evolved to ensure that newborns become colonized upon entry into the microbial-dominated world. Hopefully, this transfers an optimal set of bacterial partners that stimulate the immune system provide sources of nutrition and prevent various acute diseases or ones that emerge later in life (e.g., allergies, diabetes and IBD). But, with obstetrical practices resulting in more cesarean births, widespread changes in the foods we eat, and more and more drugs and pollutants in our water supply and food chain, the microbiome that is transferred may not be optimal.
Breast milk ‘banking’ of donated human milk appears to be having a resurgence and while products from these are now typically pasteurized and may not offer a ‘microbiota transplant’, they may still contain bacterial and HMO components, which could influence the indigenous microbiota and the immune system. Some infant formulas now contain pro- and pre-biotics, but they remain substantially different from human milk naturally in many ways, including not having the streptococci and staphylococci that dominate the latter. While some women do not have a choice but to use infant formula, and the babies do indeed receive a number of nutritional benefits from infant formula, there is a lot more work required to make it more closely mimic the natural product.
The ability of bacteria to reach the mammary ducts, potentially through several mechanisms, raises the possibility that such processes could be detrimental to the host. Of the organisms isolated from mammary ducts and lobes to date, a number have the capacity to produce carcinogens or to induce inflammatory processes that may increase the risk of cancer. On the other hand, bacteria long associated with milk through fermentation and production of yogurt, kefir, cheese and other products may lower the risk of some women developing cancer. These studies are certainly worthy of being undertaken.
Future perspective
The tools are now available to decipher the inter-relationship between microbes at various body sites and the evolution of human life from fetus to infant, child and adult. In the majority of cases, the first 1000 days of life are greatly influenced by the microbiome of the mother and her breast milk. We need to devise studies that interrogate this time period to understand which factors (i.e., bacteria and their metabolites, nutrients and host genetics) have the optimal outcome for the health of our progeny. Further disease associations between nonbreastfeeders, bacteria and disease are likely to emerge and we may even see direct links between different microbiota types in the gut and breast linked as cofactors to more serious ailments, especially since bacteria have been detected in the breast irrespective of lactation [113]. For the infants fed with formula, we need to determine, more rigorously, the benefits and deficiencies, preferably into adulthood. If we are to make a prediction of exciting steps that will occur in the future, it is that various probiotic and prebiotic formulations will be developed to try and program human life for improved health and longevity.
Executive summary
The human breast, nipple, ducts and lobules are colonized by a wide range of bacteria, not just during periods of lactation.
Breast milk is important for nutrition and as a source of bacteria for maturation of the infant's immune system and gut. While the composition of human milk is diverse and unique to each individual, commensal staphylococci and streptococci usually predominate and many of these produce antimicrobial molecules.
Bacteria appear to reach the breast mostly through the nipple, but some translocate from the gut and oral microbiotas, likely via dendritic cells.
The banking of human milk may offer a ‘microbiota transplant’ when milk is not available. Although most donated milk is now pasteurized, it may still contain certain bacterial components beneficial for immune and gut development, as well as oligosaccharides that support the growth of indigenous bacteria in the infant gut.
The use of probiotic bacteria, fermented food products and prebiotics hold great potential to influence maternal and newborn health, and possibly even reduce the risk of more serious illnesses.
