Molecular Beacon DNA Probes and Their Bioanalytical Applications

Hanash S. , Nature (London) 422, 226 (2003).

MacGregor P. F. and Squire J. A , Clin. Chem. 48, 1170 (2002).

Noya O. Patarroyo M. E. Guzman F. and De Noya B. A , Curr. Protein Peptide Sci. 4, 299 (2003).

Solomon B. , Immunization Against Alzheimer's Disease and Other Neurodegenerative Disorders, 11 (2003).

Tyagi S. and Kramer F. R , Nature Biotechnol. 14, 303 (1996).

Perlette J. Li J. Fang X. Schuster S. Lou J. and Tan W , Rev. Anal. Chem. 21, 1 (2002).

Tsourkas A. and Bao G , Briefings in Functional Genomics and Proteomics 1, 372 (2003).

Wang K. Li J. Fang X. Schuster S. Vicens M. Kelley S. Lou H. Li J. J. Beck T. Hogrefe R. and Tan W , Biomed. Photonics Handbook 57, 1 (2003).

Fang X. Liu X. Schuster S. and Tan W , J. Am. Chem. Soc. 121, 2921 (1999).

Hamaguchi N. Ellington A. and Stanton M , Anal. Biochem. 294, 126 (2001).

Li J. J. Fang X. and Tan W , Biochem. Biophys. Res. Commun. 292, 31 (2002).

Rajendran M. and Ellington A. D , Nucl. Acids Res. 31, 5700 (2003).

Lakowicz J. R. , Principles of Fluorescence Spectroscopy (Kluwer Academic/Plenum Publishers, New York, 1999), 2nd ed.

Bernacchi S. and Mely Y , Nucl. Acids Res. 29, e62/1 (2001).

Tyagi S. Bratu D. P. and Kramer F. R , Nature Biotechnol. 16, 49 (1998).

Marras S. A. E. Kramer F. R. and Tyagi S , Nucl. Acids Res. 30, e122/1 (2002).

Crockett A. O. and Wittwer C. T , Anal. Biochem. 290, 89 (2001).

Seidel C. A. M. Schulz A. and Sauer M. H. M , J. Phys. Chem. 100, 5541 (1996).

www.molecularbeacons.com (2004).

Manganelli R. Tyagi S. and Smith I , Meth. Molec. Med. 54, 295 (2001).

Wang H. Li J. Liu H. Liu Q. Mei Q. Wang Y. Zhu J. He N. and Lu Z , Nucl. Acids Res. 30, e61/1 (2002).

Vet J. A. M. Van der Rijt B. J. M. and Blom H , Exp. Rev. Molec. Diagnost. 2, 77 (2002).

Broude N. E. , Trends Biotechnol. 20, 249 (2002).

Lou H. J. and Tan W , Instrum. Sci. Technol. 30, 465 (2002).

Fang X. Li J. J. and Tan W , Anal. Chem. 72, 3280 (2000).

Kota R. Holton T. A. and Henry R. J , Plant Molec. Biol. Rep. 17, 363 (2000).

Kuhn H. Demidov V. V. Gildea B. D. Fiandaca M. J. Coull J. C. and Frank-Kamenetskii M. D , Antisense Nucl. Acid Drug Devel. 11, 265 (2001).

Liu X. Farmerie W. Schuster S. and Tan W , Anal. Biochem. 283, 56 (2000).

Yates S. Penning M. Goudsmit J. Frantzen I. De Weijer B. Van Strijp D. and Van Gemen B , J. Clin. Microbiol. 39, 3656 (2001).

Bonnet G. Tyagi S. Libchaber A. and Kramer F. R , Proc. Natl. Acad. Sci., U.S.A. 96, 6171 (1999).

Yao G. Fang X. Yokota H. Yanagida T. and Tan W , Chem., Eur. J. 9, 5686 (2003).

Bratu D. P. Cha B. J. Mhlanga M. M. Kramer F. R. and Tyagi S , Proc. Natl. Acad. Sci., U.S.A. 100, 13308 (2003).

Fang X. H. Mi Y. M. Li J. W. J. Beck T. Schuster S. and Tan W. H , Cell Biochem. Biophys. 37, 71 (2002).

Perlette J. and Tan W. H , Anal. Chem. 73, 5544 (2001).

Sokol D. L. Zhang X. Lu P. and Gewirtz A. M , Proc. Natl. Acad. Sci., U.S.A. 95, 11538 (1998).

Tsuji A. Koshimoto H. Sato Y. Hirano M. Sei-Iida Y. Kondo S. and Ishibashi K , Biophys. J. 78, 3260 (2000).

www.bioinfo.rpi.edu/applications/mfold/old/rna/form1.cgi (2004).

www.bae.lsu.edu/tmonroe/beaconalgorithm/Beacon-AlgorithmV1.zip (2004).

Fang X. Li J. J. and Tan W , Anal. Chem. 72, 14, 3280 (2000).

Tan W. Fang X. Li J. and Liu X , Chem., Eur. J. 6, 1107 (2000).

Jovine L. , Trends Biotechnol. 20, 190 (2002).

Li J. J. Fang X. Schuster S. M. and Tan W , Angewandte Chemie, Intl. Ed. 39, 1049 (2000).

Helps C. Reeves N. Tasker S. and Harbour D , J. Clin. Microbiol. 39, 2675 (2001).

Tapp I. Malmberg L. Rennel E. Wik M. and Syvanen A. C , Biotechniques 28, 732 (2000).

Roth D. B. and Wilson J. H , Mol. Cell. Biol. 6, 4295 (1986).

Seeman N. C. , Ann. Rev. Biophys. Biomol. Struct. 27, 225 (1998).

Zimmerman S. B. and Harrison B , Nucl. Acids Res. 13, 2241 (1985).

Dugaiczyk A. Boyer H. W. and Goodman H. M , J. Mol. Biol. 96, 171 (1975).

Revet B. and Fourcade A , Nucl. Acids Res. 26, 2092 (1998).

Wang J. C. and Davidson N , J. Mol. Biol. 19, 469 (1966).

Winfree E. Liu F. Wenzler L. A. and Seeman N. C , Nature (London) 394, 539 (1998).

Li J. J. and Tan W , Anal. Biochem. 312, 251 (2003).

Li J. J. Geyer R. and Tan W , Nucl. Acids Res. 28, e52, ii (2000).

Nozaki S. Tomioka Y. Hishinuma T. Inoue M. Nagumo Y. Tsuruta L. R. Hayashi K. Matsumoto T. Kato Y. Ishiwata S. Itoh K. Suzuki T. Hirama M. and Mizugaki M , J. Biochem. 131, 729 (2002).

Strouse R. J. Hakki F. Z. Wang S. C. DeFusco A. W. Garrett J. L. and Schenerman M. A , BioPharm (Duluth, Minnesota) 13, 40 (2000).

Doherty A. J. and Suh S. W , Nucl. Acids Res. 28, 4051 (2000).

Doherty A. J. and Dafforn T. R , J. Mol. Biol. 296, 43 (2000).

Lehman I. R. , Science (Washington, D.C.) 186, 790 (1974).

Lindahl T. and Wood R. D , Science (Washington, D.C.) 286, 1897 (1999).

Odell M. and Shuman S , J. Biol. Chem. 274, 14032 (1999).

Sriskanda V. and Shuman S , Nucl. Acids Res. 26, 3536 (1998).

Kinoshita Y. Nishigaki K. and Husimi Y , Nucl. Acids Res. 25, 3747 (1997).

Landegren U. Kaiser R. Sanders J. and Hood L , Science (Washington, D.C.) 241, 1077 (1988).

Tang Z. Wang K. Tan W. Li J. Liu L. Guo Q. Meng X. Ma C. and Huang S , Nucl. Acids Res. 31, e148/1 (2003).

Dirks R. W. Molenaar C. and Tanke H. J , Histochem. Cell Biol. 115, 3 (2001).

Matsuo T. , Biochim. Biophys. Acta 1379, 178 (1998).

Liu X. and Tan W , Anal. Chem. 71, 5054 (1999).

Epstein J. R. Leung A. P. K. Lee K. H. and Walt D. R , Biosens. Bioelectron. 18, 541 (2003).

Cantor C. R. and Schimmel P. R , Biophysical Chemistry of Macromolecules, Pt. 3: The Behavior of Biological Macromolecules, 624 (1980).

Yao G. and Tan W , Anal. Biochem., (2004), in press.

Ramachandran A. Flinchbaugh J. Ayoubi P. Olah G. A. and Malayer J. R , Biosens. Bioelectron. 19, 727 (2004).

Zhao X. Tapec-Dytioco R. Wang K. and Tan W , Anal. Chem. 75, 3476 (2003).

Daniel M. C. and Astruc D , Chem. Rev. 104, 293 (2004).

Drexhage K. H. , in Progress in Optics XII, Wolf E. Ed. (North Holland, Amsterdam, 1974).

Ritchie G. and Burstein E , Phys. Rev. B 24, 4843 (1981).

Cnossen G. Drabe K. E. and Wiersma D. A , J. Chem. Phys. 98, 5276 (1993).

Du H. Disney M. D. Miller B. L. and Krauss T. D , J. Am. Chem. Soc. 125, 4012 (2003).

Cao Y. C. Jin R. and Mirkin C. A , Science (Washington, D.C.) 297, 1536 (2002).

Haes A. J. and Van Duyne R. P , J. Am. Chem. Soc. 124, 10596 (2002).

Jayesena S. D. , Clin. Chem. 45, 1628 (1999).

Ellington A. and Szostak J. W , Nature (London) 346, 818 (1990).

Robertson D. L. and Joyce G. F , Nature (London) 344, 467 (1990).

Tuerk C. and Gold L , Science (Washington, D.C.) 249, 505 (1990).

Schultze P. Macaya R. F. and Feigon J , J. Mol. Biol. 235, 1532 (1994).

Zhang P. Beck T. and Tan W , Angew. Chem. Int. Ed. Engl. 40, 402 (2001).

Fang X. Cao Z. Beck T. and Tan W , Anal. Chem. 73, 5752 (2001).

Potyrailo R. A. Conrad R. C. Ellington A. and Hieftje G. M , Anal. Chem. 70, 3419 (1998).

Fang X. Sen A. Vicens M. and Tan W , Chem., Biochem. 4, 829 (2003).