Fungi and Industrial Biotechnology – A Special Issue for an Amazing Kingdom

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Abe K , Gomi K . Food products fermented by Aspergillus oryzae. Goldman GH , Osmani SA . The Aspergilli: Genomics, Medical Aspects, Biotechnology and Research Methods. Boca Raton, FL: CRC Press Taylor & Francis Group, 2008; 429–440.

Baker SE , Thykaer J , Adney WS et al. Fungal genome sequencing and bioenergy. Fungal Biol Rev, 2008; 22:1–5.

Grigoriev IV , Cullen D , Goodwin SB et al. Fueling the future with fungal genomics. Mycology, 2011; 2:192–209.

Simmons BA , Magnuson J . A conversation with Blake Simmons, Vice President, Deconstruction Division, and Jon Magnuson, Director, Fungal Biotechnology Group, Joint BioEnergy Institute, Emeryville, CA. Ind Biotechnol, 2013; 9:108–112.

Goffeau A , Barrell BG , Bussey H et al. Life with 6000 genes. Science, 1990; 274:546–567.

Andersen MR , Salazar MP , Schaap PJ et al. Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88, 2011; 21:885–897.

Pel HJ , de Winde JH , Archer DB et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol, 2007; 25:221–231.

Martinez D , Berka RM , Henrissat B et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) Nat Biotechnol, 2008; 26:553–560.

Nicksich J . EMSL capabilities and expertise: Pushing the frontiers of bioengineering. Ind Biotechnol, 2013; 9:113–116.

Le Crom S , Schackwitz W , Pennacchio L et al. Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proc Natl Acad Sci, 2009; 106:16151–16156.

Colot HV , Park G , Turner GE et al. A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci, 2006; 103:10352–10357.

Ninomiya Y , Suzuki K , Ishii C , Inoue H . Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining. Proc Natl Acad Sci, 2004; 101:12248–12253.

Jourdier E , Poughan L , Larroche C , Ben Chaabane F . Comprehensive study and modeling of acetic acid effect on Trichoderma reesei growth. Ind Biotechnol, 2013; 9:132–138.

Li A , Sachdeva S , Urbanus JH , Punt PJ . In-stream itaconic acid recovery from Aspergillus terreus fedbatch fermentation. Ind Biotechnol, 2013; 9:139–146.

McCluskey K . Biological resource centers provide data and characterized living material for industrial biotechnology. Ind Biotechnol, 2013; 9:117–122.

Cantarel BL , Coutinho PM , Rancurel C et al. The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics. Nucl Acids Res, 2009; 37:D233–238.

Murphy C , Powlowski J , Wu M et al. Curation of characterized glycoside hydrolases of fungal origin. Database, 2011, 10.1093/database/bar020

Levasseur A , Drula E , Lombard V et al. Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Biotechnol Biofuels, 2013; 6:41.

Ekwe E , Morgenstern I , Tsang A et al. Non-hydrolytic cellulose active proteins: Research progress and potential application in biorefineries. Ind Biotechnol, 2013; 9:123–131.