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Research article

First published 2011-6

Directed Overlap-inclusion Graphs as Representations of Ciliate Genes

Sepinoud Azimi, Tero Harju, Miika Langille [...]

Fundamenta Informaticae

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Research article

First published 2023-06

ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs

Margherita Cavattoni, Matteo Comin

Journal of Computational Biology

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Research article

First published 2016-06

CRISPR Detection From Short Reads Using Partial Overlap Graphs

Ilan Ben-Bassat, Benny Chor

Journal of Computational Biology

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Research article

First published 2001-10

A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study

David A. Bader, Bernard M.E. Moret, Mi Yan

Journal of Computational Biology

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Research article

First published 2013-2

RoClust: Role discovery for graph clustering

Bin-Hui Chou, Einoshin Suzuki

Web Intelligence

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Research article

First published 2006-03

Graph Theoretical Insights into Evolution of Multidomain Proteins

Teresa Przytycka, George Davis, Nan Song [...]

Journal of Computational Biology

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Research article

First published

Stability of Characters and Construction of Phylogenetic Trees

Teresa Przytycka

Journal of Computational Biology

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Research article

First published 2012-3

A dynamic clustering algorithm for building overlapping clusters

Airel Pérez-Suárez, José Fco. Martínez-Trinidad, Jesús A. Carrasco-Ochoa [...]

Intelligent Data Analysis: An International Journal

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Research article

First published 2026-1

Elucidating Transitions of k -mer-Based Objects Across k -mer Sizes

Adam Park, David Koslicki

Journal of Computational Biology

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Research article

First published 2014-02

Detecting Non-Uniform Clusters in Large-Scale Interaction Graphs

Nissan Levtov, Sandeep Amberkar, Zakharia M Frenkel [...]

Journal of Computational Biology

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