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Research article

First published 2006-7

SSToSS – Sequence-Structural Templates of Single-Member Superfamilies

Saikat Chakrabarti, Gowri Manohari, Ganesan Pugalenthi [...]

In Silico Biology

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Research article

First published 1997-3

Score Distributions for Simultaneous Matching to Multiple Motifs

Timothy L. Bailey, Michael Gribskov

Journal of Computational Biology

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Research article

First published

A Structure-Based Flexible Search Method for Motifs in RNA

Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny Barash [...]

Journal of Computational Biology

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Research article

First published 2013-02

Ballast : A Ball-based Algorithm for Structural Motifs

Lu He, Fabio Vandin, Gopal Pandurangan [...]

Journal of Computational Biology

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Research article

First published 1999-2

An Evolutionary Classification of the Metallo-ß-Lactamase Fold Proteins

L. Aravind

In Silico Biology

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Research article

First published 2002-2

Database and Analysis System for cDNA Clones Obtained from Full-Length Enriched cDNA Libraries

Tetsuo Nishikawa, Toshio Ota, Yuri Kawai [...]

In Silico Biology

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Research article

First published 2005-09

Bayesian Models and Markov Chain Monte Carlo Methods for Protein Motifs with the Secondary Characteristics

Jun Xie, Nak-Kyeong Kim

Journal of Computational Biology

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Research article

First published 2011-09

An Algorithm to Solve the Motif Alignment Problem for Approximate Nested Tandem Repeats in Biological Sequences

Atheer A. Matroud, Christopher P. Tuffley, Michael D. Hendy

Journal of Computational Biology

Open access

Research article

First published 2019

OSTRFPD: Multifunctional Tool for Genome-Wide Short Tandem Repeat Analysis for DNA,Transcripts,and Amino Acid Sequences with Integrated Primer Designer

Vivek Bhakta Mathema, Arjen M Dondorp, Mallika Imwong

Evolutionary Bioinformatics

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Research article

First published 2009-11

Prediction of Proteins Putatively Involved in the Thiol: Disulfide Redox Metabolism of a Bacterium (Listeria): The CXXC Motif as Query Sequence

Shubha Gopal, Vanishree Srinivas, Farhan Zameer [...]

In Silico Biology

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