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Research article

First published 2006

Sources of Variation in Ancestral Sequence Reconstruction for HIV-1 Envelope Genes

Howard A. Ross, David C. Nickle, Yi Liu [...]

Evolutionary Bioinformatics

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Research article

First published 2007-03

Reconstruction of Ancestral Genomic Sequences Using Likelihood

Isaac Elias, Tamir Tuller

Journal of Computational Biology

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Research article

First published 2026-4

Reconstructing Ancestral Non-Coding RNAs of Multiple Families Using Sequence and Structural Information with Tree Decomposition

Songdi Hu, Vladimir Reinharz, Olivier Tremblay-Savard

Journal of Computational Biology

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Research article

First published 2010-09

Reconstructing Ancestral Genomic Sequences by Co-Evolution: Formal Definitions,Computational Issues,and Biological Examples

Tamir Tuller, Hadas Birin, Martin Kupiec [...]

Journal of Computational Biology

Open access

Research article

First published 2005

Evolution of Proteins and Proteomes: A Phylogenetics Approach

Toni Gabaldón

Evolutionary Bioinformatics

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Research article

First published

Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem

Abdoulaye Banire Diallo, Vladimir Makarenkov, Mathieu Blanchette

Journal of Computational Biology

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Research article

First published 2009-03

Phylogenomic Dating—The Relative Antiquity of Archaeal Metabolic and Physiological Traits

Carrine E. Blank

Astrobiology

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Research article

First published 2009-09

Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures

Géraldine Jean, David James Sherman, Macha Nikolski

Journal of Computational Biology

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Research article

First published 2000-08

Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints

David Sankoff, David Bryant, Mélanie Deneault [...]

Journal of Computational Biology

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Research article

First published 2013-09

The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees

Sandro Andreotti, Knut Reinert, Stefan Canzar

Journal of Computational Biology

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