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Research article

First published 1997-10

Protein Structure and Energy Landscape Dependence on Sequence Using a Continuous Energy Function

K.A. Dill, A.T. Phillips, J.B. Rosen

Journal of Computational Biology

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Research article

First published 2015-09

A Data-Driven Evolutionary Algorithm for Mapping Multibasin Protein Energy Landscapes

Rudy Clausen, Amarda Shehu

Journal of Computational Biology

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Research article

First published 2020-04

Minimization-Aware Recursive K*: A Novel,Provable Algorithm that Accelerates Ensemble-Based Protein Design and Provably Approximates the Energy Landscape

Jonathan D. Jou, Graham T. Holt, Anna U. Lowegard [...]

Journal of Computational Biology

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Research article

First published 2002-11

The Effects of Solvent and Anharmonicity on Incoherent Inelastic Neutron Scattering Spectra of Proteins

Akio Kitao, Masaki Takeda

Journal of Neutron Research

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Research article

First published 2011-06

Exploring the Landscape of Protein-Ligand Interaction Energy Using Probabilistic Approach

Marcin Pacholczyk, Marek Kimmel

Journal of Computational Biology

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Research article

First published 2018-01

Sample-Based Models of Protein Energy Landscapes and Slow Structural Rearrangements

Tatiana Maximova, Zijing Zhang, Daniel B. Carr [...]

Journal of Computational Biology

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Research article

First published 2009-04

Residue Level Three-dimensional Workspace Maps for Conformational Trajectory Planning of Proteins

Christopher Madden, Peter Bohnenkamp, Kazem Kazerounian [...]

The International Journal of Robotics Research

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Research article

First published 2003-06

Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native Structures

Nancy M. Amato, Ken A. Dill, Guang Song

Journal of Computational Biology

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Research article

First published 2005-07

Using Motion Planning to Study RNA Folding Kinetics

Xinyu Tang, Bonnie Kirkpatrick, Shawna Thomas [...]

Journal of Computational Biology

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Research article

First published 2002-2

New Techniques for Protein Simulations The Generalized-Ensemble Approach

Ulrich H.E. Hansmann

Journal of Computational Methods in Sciences and Engineering

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