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Articles (78)

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1-10 of 78 results for K-mers

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Select article: Elucidating Transitions of k -mer-Based Objects Across k -mer Sizes

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Research article

First published 2026-1

Elucidating Transitions of k -mer-Based Objects Across k -mer Sizes

Adam Park, David Koslicki

Journal of Computational Biology

Select article: Fast Approximation of Frequent k -Mers and Applications to Metagenomics

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Research article

First published 2020-04

Fast Approximation of Frequent k -Mers and Applications to Metagenomics

Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin

Journal of Computational Biology

Select article: Statistically Consistent k -mer Methods for Phylogenetic Tree Reconstruction

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Research article

First published 2017-02

Statistically Consistent k -mer Methods for Phylogenetic Tree Reconstruction

Elizabeth S. Allman, John A. Rhodes, Seth Sullivant

Journal of Computational Biology

Select article: Computational Performance Assessment of k-mer Counting Algorithms

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Research article

First published 2016-04

Computational Performance Assessment of k-mer Counting Algorithms

Nelson Pérez, Miguel Gutierrez, Nelson Vera

Journal of Computational Biology

Select article: Joker de Bruijn: Covering k -Mers Using Joker Characters

Open access

Research article

First published 2018-11

Joker de Bruijn: Covering k -Mers Using Joker Characters

Yaron Orenstein, Yun William Yu, Bonnie Berger

Journal of Computational Biology

Select article: Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters

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Research article

First published 2017-06

Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters

David Pellow, Darya Filippova, Carl Kingsford

Journal of Computational Biology

Select article: Representation of k -Mer Sets Using Spectrum-Preserving String Sets

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Research article

First published 2021-04

Representation of k -Mer Sets Using Spectrum-Preserving String Sets

Amatur Rahman, Paul Medevedev

Journal of Computational Biology

Select article: Enhanced Compression of k -Mer Sets with Counters via de Bruijn Graphs

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Research article

First published 2024-06

Enhanced Compression of k -Mer Sets with Counters via de Bruijn Graphs

Enrico Rossignolo, Matteo Comin

Journal of Computational Biology

Select article: Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k -Mer Annotation

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Research article

First published 2022-02

Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k -Mer Annotation

Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov

Journal of Computational Biology

Select article: The Statistics of k -mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches

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Research article

First published 2022-02

The Statistics of k -mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches

Antonio Blanca, Robert S. Harris, David Koslicki [...]

Journal of Computational Biology

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