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Research article

First published 2022-12

On the Hardness of Sequence Alignment on De Bruijn Graphs

Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru

Journal of Computational Biology

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Research article

First published 2003-12

An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences

Yu Zhang, Michael S. Waterman

Journal of Computational Biology

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Research article

First published

Design of Compact,Universal DNA Microarrays for Protein Binding Microarray Experiments

Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger [...]

Journal of Computational Biology

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Research article

First published 2011-11

Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers

Paul Medvedev, Son Pham, Mark Chaisson [...]

Journal of Computational Biology

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Research article

First published 2000-08

Universal DNA Tag Systems: A Combinatorial Design Scheme

Amir Ben-Dor, Richard Karp, Benno Schwikowski [...]

Journal of Computational Biology

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Research article

First published 2015-06

dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes

Yana Safonova, Anton Bankevich, Pavel A. Pevzner

Journal of Computational Biology

Open access

Research article

First published 2020-04

Sparse Binary Relation Representations for Genome Graph Annotation

Mikhail Karasikov, Harun Mustafa, Amir Joudaki [...]

Journal of Computational Biology

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Research article

First published 2023-06

Efficient Colored de Bruijn Graph for Indexing Reads

Nozomi Hasegawa, Kana Shimizu

Journal of Computational Biology

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Research article

First published 2020-04

An Efficient,Scalable,and Exact Representation of High-Dimensional Color Information Enabled Using de Bruijn Graph Search

Fatemeh Almodaresi, Prashant Pandey, Michael Ferdman [...]

Journal of Computational Biology

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Research article

First published 2015-8

Maximizing T-complexity

Gregory Clark, Jason Teutsch

Fundamenta Informaticae

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